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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG997742.1 nt Oryza sativa genome assembly, organ... 134551 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997747.1 nt Oryza sativa genome assembly, organ... 134535 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997751.1 nt Oryza sativa genome assembly, organ... 134487 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997763.1 nt Oryza sativa genome assembly, organ... 134586 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997764.1 nt Oryza sativa genome assembly, organ... 134577 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997770.1 nt Oryza sativa genome assembly, organ... 134534 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997773.1 nt Oryza sativa genome assembly, organ... 134556 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997780.1 nt Oryza sativa genome assembly, organ... 134550 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997782.1 nt Oryza sativa genome assembly, organ... 134555 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997783.1 nt Oryza sativa genome assembly, organ... 134556 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997785.1 nt Oryza sativa genome assembly, organ... 134557 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997786.1 nt Oryza sativa genome assembly, organ... 134421 bp Oryza sativa QL-PLN-00-007 615 bp View
HG997817.1 nt Oryza sativa genome assembly, organ... 134503 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998043.1 nt Oryza sativa genome assembly, organ... 134516 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998126.1 nt Oryza sativa genome assembly, organ... 134536 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998128.1 nt Oryza sativa genome assembly, organ... 134502 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998130.1 nt Oryza sativa genome assembly, organ... 134529 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998132.1 nt Oryza sativa genome assembly, organ... 134574 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998133.1 nt Oryza sativa genome assembly, organ... 134555 bp Oryza sativa QL-PLN-00-007 615 bp View
HG998138.1 nt Oryza sativa genome assembly, organ... 134535 bp Oryza sativa QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.