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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ801082.1 nt Bauhinia rufescens voucher Gillis 9... 1057 bp Bauhinia rufescens QL-PLN-00-007 598 bp View
FJ801083.1 nt Lysiphyllum cunninghamii voucher Fa... 1022 bp Lysiphyllum cunninghamii QL-PLN-00-007 598 bp View
FJ801084.1 nt Bauhinia yunnanensis voucher Hart s... 1083 bp Bauhinia yunnanensis QL-PLN-00-007 594 bp View
FJ801086.1 nt Bauhinia jenningsii voucher Wunderl... 1082 bp Bauhinia jenningsii QL-PLN-00-007 598 bp View
FJ801087.1 nt Bauhinia pauletia voucher Moreno 84... 1080 bp Bauhinia pauletia QL-PLN-00-007 598 bp View
FJ801088.1 nt Bauhinia tomentosa voucher Bruneau ... 1073 bp Bauhinia tomentosa QL-PLN-00-007 592 bp View
FJ801089.1 nt Bauhinia petersiana voucher Fairchi... 1041 bp Bauhinia petersiana QL-PLN-00-007 587 bp View
FJ801090.1 nt Phanera vahlii voucher Gillis 7882 ... 1078 bp Phanera vahlii QL-PLN-00-007 594 bp View
FJ801091.1 nt Tylosema fassoglense voucher Fantz ... 1075 bp Tylosema fassoglense QL-PLN-00-007 587 bp View
FJ801092.1 nt Bauhinia guianensis voucher Ramirez... 1077 bp Schnella guianensis QL-PLN-00-007 581 bp View
FJ801093.1 nt Bauhinia hymenaeifolia voucher Gent... 1086 bp Bauhinia hymenaeifolia QL-PLN-00-007 581 bp View
FJ801094.1 nt Bauhinia forficata voucher McDiarmi... 1077 bp Bauhinia forficata QL-PLN-00-007 597 bp View
FJ801096.1 nt Bauhinia mollis voucher Kajita 9412... 1089 bp Bauhinia mollis QL-PLN-00-007 604 bp View
FJ801097.1 nt Bauhinia pulchella voucher Anderson... 1086 bp Bauhinia pulchella QL-PLN-00-007 602 bp View
FJ801098.1 nt Bauhinia rufa voucher Pennington 48... 1052 bp Bauhinia rufa QL-PLN-00-007 602 bp View
FJ801099.1 nt Bauhinia lunarioides voucher Wilson... 1045 bp Bauhinia lunarioides QL-PLN-00-007 598 bp View
FJ801100.1 nt Bauhinia acreana voucher Nee 34983 ... 1055 bp Bauhinia acreana QL-PLN-00-007 599 bp View
FJ801101.1 nt Bauhinia ramosissima voucher Stewar... 1079 bp Bauhinia ramosissima QL-PLN-00-007 598 bp View
FJ801102.1 nt Bauhinia seminarioi voucher Iltis &... 1084 bp Bauhinia seminarioi QL-PLN-00-007 602 bp View
FJ801103.1 nt Bauhinia weberbaueri voucher Alayo ... 1084 bp Bauhinia weberbaueri QL-PLN-00-007 602 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.