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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
FJ150554.1 nt Ixora dzumacensis voucher Mouly et ... 1612 bp Ixora dzumacensis QL-PLN-00-007 565 bp View
FJ150556.1 nt Ixora elliotii voucher Dumetz 1175 ... 1610 bp Ixora elliotii QL-PLN-00-007 565 bp View
FJ150557.1 nt Ixora emirnensis voucher Lowry et a... 1611 bp Ixora emirnensis QL-PLN-00-007 565 bp View
FJ150560.1 nt Ixora foliosa voucher Onana et al. ... 1611 bp Ixora foliosa QL-PLN-00-007 565 bp View
FJ150561.1 nt Ixora francii voucher Mouly & McPhe... 1597 bp Ixora francii QL-PLN-00-007 565 bp View
FJ150562.1 nt Ixora hiernii voucher Adam 23101 (P... 1611 bp Ixora hiernii QL-PLN-00-007 565 bp View
FJ150563.1 nt Ixora iteophylla voucher Schaller e... 1357 bp Ixora iteophylla QL-PLN-00-007 560 bp View
FJ150564.1 nt Ixora jourdanii voucher Mouly 513 (... 1543 bp Ixora jourdanii QL-PLN-00-007 565 bp View
FJ150565.1 nt Ixora kuakuensis voucher Munzinger ... 1613 bp Ixora kuakuensis QL-PLN-00-007 565 bp View
FJ150566.1 nt Ixora lecardii voucher Mouly et al.... 1585 bp Ixora lecardii QL-PLN-00-007 565 bp View
FJ150567.1 nt Ixora longiloba voucher Mouly 165 (... 1609 bp Ixora longiloba QL-PLN-00-007 565 bp View
FJ150568.1 nt Ixora marquesensis voucher Mouly 50... 1598 bp Ixora marquesensis QL-PLN-00-007 565 bp View
FJ150570.1 nt Ixora mocquerysii voucher Malcomber... 1608 bp Ixora mocquerysii QL-PLN-00-007 565 bp View
FJ150571.1 nt Ixora narcissodora voucher Luke 832... 1606 bp Ixora narcissodora QL-PLN-00-007 565 bp View
FJ150573.1 nt Ixora nigricans voucher Larsen et a... 1565 bp Ixora nigricans QL-PLN-00-007 565 bp View
FJ150575.1 nt Ixora oligantha voucher Mouly et al... 1579 bp Ixora oligantha QL-PLN-00-007 565 bp View
FJ150576.1 nt Ixora pavetta voucher FTG P 1738 (U... 1613 bp Ixora pavetta QL-PLN-00-007 565 bp View
FJ150577.1 nt Ixora pelagica voucher Smith 9288 (... 1598 bp Ixora pelagica QL-PLN-00-007 565 bp View
FJ150578.1 nt Ixora peruviana voucher Plowman et ... 1596 bp Ixora peruviana QL-PLN-00-007 565 bp View
FJ150580.1 nt Ixora raiateensis voucher Mouly et ... 1598 bp Ixora raiateensis QL-PLN-00-007 565 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.