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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OV049905.1 nt Oryza rufipogon genome assembly, or... 134537 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049906.1 nt Oryza rufipogon genome assembly, or... 134495 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049907.1 nt Oryza rufipogon genome assembly, or... 134480 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049908.1 nt Oryza rufipogon genome assembly, or... 134502 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049909.1 nt Oryza rufipogon genome assembly, or... 134541 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049910.1 nt Oryza rufipogon genome assembly, or... 134549 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049911.1 nt Oryza barthii genome assembly, orga... 134598 bp Oryza barthii QL-PLN-00-007 615 bp View
OV049912.1 nt Oryza rufipogon genome assembly, or... 134639 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049913.1 nt Oryza rufipogon genome assembly, or... 134539 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049914.1 nt Oryza rufipogon genome assembly, or... 134587 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049915.1 nt Oryza rufipogon genome assembly, or... 134535 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049916.1 nt Oryza rufipogon genome assembly, or... 134583 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049917.1 nt Oryza rufipogon genome assembly, or... 134494 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049918.1 nt Oryza rufipogon genome assembly, or... 134509 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049920.1 nt Oryza rufipogon genome assembly, or... 134541 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049921.1 nt Oryza rufipogon genome assembly, or... 134494 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049922.1 nt Oryza rufipogon genome assembly, or... 134582 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049923.1 nt Oryza rufipogon genome assembly, or... 134481 bp Oryza rufipogon QL-PLN-00-007 615 bp View
OV049929.1 nt Oryza barthii strain W0652 genome a... 134656 bp Oryza barthii QL-PLN-00-007 615 bp View
OV049930.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.