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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OR260147.1 nt Hemerocallis hybrid cultivar isolat... 156159 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260148.1 nt Hemerocallis citrina cultivar Chang... 156051 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260149.1 nt Hemerocallis citrina cultivar Xianj... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260150.1 nt Hemerocallis citrina cultivar Gulao... 156079 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260151.1 nt Hemerocallis citrina cultivar Heizu... 156117 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260152.1 nt Hemerocallis citrina cultivar Zaohu... 156109 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260153.1 nt Hemerocallis citrina cultivar Chash... 156095 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260154.1 nt Hemerocallis citrina cultivar Bayue... 156120 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260155.1 nt Hemerocallis citrina cultivar Tiang... 156095 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260156.1 nt Hemerocallis sp. isolate 118 cultiv... 156076 bp Hemerocallis hybrid cultivar QL-PLN-00-007 586 bp View
OR260158.1 nt Hemerocallis citrina cultivar Siyue... 156116 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260159.1 nt Hemerocallis citrina cultivar Quxia... 156089 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260160.1 nt Hemerocallis citrina cultivar Shayu... 156081 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260161.1 nt Hemerocallis citrina isolate 127 cu... 156052 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260162.1 nt Hemerocallis citrina cultivar Mengz... 156117 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260163.1 nt Hemerocallis citrina isolate 129 cu... 156068 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260164.1 nt Hemerocallis citrina cultivar Jinzh... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260165.1 nt Hemerocallis citrina cultivar Daoji... 156082 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260166.1 nt Hemerocallis citrina cultivar Dawuz... 156048 bp Hemerocallis citrina QL-PLN-00-007 584 bp View
OR260167.1 nt Hemerocallis citrina cultivar Xiyez... 156088 bp Hemerocallis citrina QL-PLN-00-007 584 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.