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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP328211.1 nt Themeda triandra voucher T186_Jobso... 138899 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328212.1 nt Themeda triandra voucher T196_Jobso... 138866 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328214.1 nt Themeda triandra voucher T201_Jobso... 138842 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328215.1 nt Themeda triandra voucher T203_Jobso... 138891 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328216.1 nt Themeda triandra voucher T204_Jobso... 138825 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328217.1 nt Themeda triandra voucher T205_Jobso... 138842 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328218.1 nt Themeda triandra voucher T247_Jobso... 138869 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328219.1 nt Themeda triandra voucher T284_Jobso... 138748 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328220.1 nt Themeda triandra voucher T429_Jobso... 138844 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328221.1 nt Themeda triandra voucher T441_Jobso... 138683 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328222.1 nt Themeda triandra voucher T449_Jobso... 138845 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328223.1 nt Themeda triandra voucher T450_Jobso... 138852 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328224.1 nt Themeda triandra voucher T455_Jobso... 138897 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328225.1 nt Themeda triandra voucher T477_Jobso... 138861 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328226.1 nt Themeda triandra voucher T480_Jobso... 138858 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328227.1 nt Themeda triandra voucher T481_Jobso... 138875 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328228.1 nt Themeda triandra voucher T488_Jobso... 138858 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328229.1 nt Themeda triandra voucher T492_Jobso... 138919 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328230.1 nt Themeda triandra voucher T497_Jobso... 138841 bp Themeda triandra QL-PLN-00-007 525 bp View
OP328231.1 nt Themeda triandra voucher T509_Jobso... 138783 bp Themeda triandra QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.