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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
OP235347.1 nt Saccharum spontaneum isolate HN-2 c... 141166 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235348.1 nt Saccharum spontaneum isolate IN76-0... 141179 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235349.1 nt Saccharum spontaneum isolate IN84-0... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235350.1 nt Saccharum spontaneum isolate IN84-0... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235351.1 nt Saccharum spontaneum isolate IND81-... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235352.1 nt Saccharum spontaneum isolate IK76-0... 141179 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235353.1 nt Saccharum spontaneum isolate IND81-... 141192 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235354.1 nt Saccharum spontaneum isolate IND81-... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235355.1 nt Saccharum spontaneum isolate IND81-... 141159 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235356.1 nt Saccharum spontaneum isolate PCANOR... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235357.1 nt Saccharum spontaneum isolate s15-95... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235358.1 nt Saccharum spontaneum isolate SES004... 141187 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235359.1 nt Saccharum spontaneum isolate SES072... 141162 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235360.1 nt Saccharum spontaneum isolate SES113... 141198 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235361.1 nt Saccharum spontaneum isolate SES186... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235362.1 nt Saccharum spontaneum isolate SES196... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235363.1 nt Saccharum spontaneum isolate IND81-... 141189 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235364.1 nt Saccharum spontaneum isolate SES197... 141186 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235365.1 nt Saccharum spontaneum isolate SES239... 141188 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
OP235366.1 nt Saccharum spontaneum isolate SES517... 141198 bp Saccharum spontaneum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.