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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
ON209182.1 nt Papaver nudicaule chloroplast, comp... 153683 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209183.1 nt Papaver nudicaule chloroplast, comp... 153905 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209184.1 nt Papaver nudicaule chloroplast, comp... 153819 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209185.1 nt Papaver nudicaule chloroplast, comp... 153813 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209186.1 nt Papaver nudicaule chloroplast, comp... 153861 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209187.1 nt Papaver nudicaule chloroplast, comp... 153827 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209188.1 nt Papaver nudicaule chloroplast, comp... 153812 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209189.1 nt Papaver nudicaule chloroplast, comp... 153788 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209190.1 nt Papaver nudicaule chloroplast, comp... 153840 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON209191.1 nt Papaver nudicaule chloroplast, comp... 153806 bp Papaver nudicaule QL-PLN-00-007 596 bp View
ON212105.1 nt Lonicera caerulea voucher LV1_1 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212106.1 nt Lonicera caerulea voucher LV1_2 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212107.1 nt Lonicera caerulea voucher LV1_3 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212108.1 nt Lonicera caerulea voucher LV1_6 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212109.1 nt Lonicera caerulea voucher LV1_12 GM... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212110.1 nt Lonicera caerulea voucher LV2_1 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212111.1 nt Lonicera caerulea voucher LV2_3 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212112.1 nt Lonicera caerulea voucher LV2_4 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212113.1 nt Lonicera caerulea voucher LV2_7 GMC... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View
ON212114.1 nt Lonicera caerulea voucher LV2_10 GM... 1015 bp Lonicera caerulea QL-PLN-00-007 586 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.