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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT650129.1 nt Eremophila dalyana voucher CANB6027... 151682 bp Eremophila dalyana QL-PLN-00-007 566 bp View
MT650141.1 nt Eremophila mackinlayi voucher CBG97... 151816 bp Eremophila mackinlayi QL-PLN-00-007 563 bp View
MT650166.1 nt Eremophila deserti voucher MELUD119... 151584 bp Eremophila deserti QL-PLN-00-007 564 bp View
MT650173.1 nt Eremophila oldfieldii voucher MELUD... 147412 bp Eremophila oldfieldii QL-PLN-00-007 563 bp View
MT650201.1 nt Eremophila hughesii voucher MELUD11... 151548 bp Eremophila hughesii QL-PLN-00-007 556 bp View
MT650202.1 nt Eremophila miniata voucher MELUD119... 147560 bp Eremophila miniata QL-PLN-00-007 564 bp View
MT650206.1 nt Eremophila abietina voucher MELUD11... 152007 bp Eremophila abietina QL-PLN-00-007 567 bp View
MT650214.1 nt Eremophila gilesii voucher MELUD119... 151996 bp Eremophila gilesii QL-PLN-00-007 568 bp View
MT650216.1 nt Eremophila maculata voucher MELUD11... 151679 bp Eremophila maculata QL-PLN-00-007 564 bp View
MT650220.1 nt Eremophila clarkei voucher MELUD119... 151662 bp Eremophila clarkei QL-PLN-00-007 565 bp View
MT650222.1 nt Eremophila simulans voucher MELUD11... 151930 bp Eremophila simulans QL-PLN-00-007 563 bp View
MT650226.1 nt Eremophila glabra voucher MELUD1191... 151552 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650229.1 nt Eremophila glabra voucher MELUD1191... 151562 bp Eremophila glabra QL-PLN-00-007 566 bp View
MT650232.1 nt Eremophila obovata voucher MELUD119... 151581 bp Eremophila obovata QL-PLN-00-007 556 bp View
MT650237.1 nt Eremophila compacta voucher MELUD11... 151634 bp Eremophila compacta QL-PLN-00-007 557 bp View
MT650250.1 nt Eremophila glabra voucher MELUD1191... 151516 bp Eremophila glabra QL-PLN-00-007 564 bp View
MT650252.1 nt Eremophila platythamnos voucher MEL... 147538 bp Eremophila platythamnos QL-PLN-00-007 564 bp View
MT650254.1 nt Eremophila arachnoides voucher MELU... 151743 bp Eremophila arachnoides QL-PLN-00-007 566 bp View
MT650257.1 nt Eremophila maculata voucher MELUD11... 142339 bp Eremophila maculata QL-PLN-00-007 564 bp View
MT650263.1 nt Eremophila battii voucher MELUD1191... 151686 bp Eremophila battii QL-PLN-00-007 558 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.