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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT504983.1 nt Heteropogon contortus voucher K:SLC... 134885 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504984.1 nt Heteropogon contortus voucher K:710... 134991 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504985.1 nt Heteropogon contortus voucher K:414... 134980 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504986.1 nt Heteropogon contortus voucher K:123... 134979 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504988.1 nt Heteropogon contortus voucher BM:99... 134988 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504989.1 nt Heteropogon contortus voucher BM:57... 134979 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504990.1 nt Heteropogon contortus voucher K:17 ... 134983 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504991.1 nt Heteropogon contortus voucher K:144... 134998 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504992.1 nt Heteropogon contortus voucher K:235... 135073 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504993.1 nt Heteropogon contortus voucher K:232... 135098 bp Heteropogon contortus QL-PLN-00-007 526 bp View
MT504996.1 nt Heteropogon melanocarpus voucher K:... 139851 bp Heteropogon melanocarpus QL-PLN-00-007 525 bp View
MT505006.1 nt Themeda arguens voucher K:7795 chlo... 138790 bp Themeda arguens QL-PLN-00-007 525 bp View
MT505013.1 nt Themeda triandra voucher K:867 chlo... 138900 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505014.1 nt Themeda triandra voucher K:14430 ch... 138850 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505015.1 nt Themeda triandra voucher K:4844 chl... 138816 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505016.1 nt Themeda triandra voucher K:A2699 ch... 138998 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505017.1 nt Themeda triandra voucher K:23898 ch... 138833 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505018.1 nt Themeda triandra voucher K:3457 chl... 138883 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505019.1 nt Themeda triandra voucher K:3032AD c... 138910 bp Themeda triandra QL-PLN-00-007 525 bp View
MT505020.1 nt Themeda triandra voucher PE:1499760... 138735 bp Themeda triandra QL-PLN-00-007 525 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.