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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MK165254.1 nt Atractocarpus sp. 13 AM-2019 vouche... 1641 bp Atractocarpus sp. 13 AM-2019 QL-PLN-00-007 573 bp View
MK165257.1 nt Gardenia conferta voucher Barrabe 3... 1635 bp Gardenia conferta QL-PLN-00-007 567 bp View
MK165258.1 nt Gardenia deplanchei voucher Munzing... 1634 bp Gardenia deplanchei QL-PLN-00-007 567 bp View
MK165259.1 nt Gardenia mollis voucher Mouly 808 (... 1641 bp Gardenia mollis QL-PLN-00-007 573 bp View
MK165260.1 nt Randia artensis voucher Barrabe 755... 1636 bp Randia artensis QL-PLN-00-007 567 bp View
MK165261.1 nt Atractocarpus sp. 5 AM-2019 voucher... 1652 bp Atractocarpus sp. 5 AM-2019 QL-PLN-00-007 567 bp View
MK165262.1 nt Randia brandzeana voucher Barrabe 3... 1634 bp Randia brandzeana QL-PLN-00-007 567 bp View
MK165264.1 nt Randia ngoyensis voucher Munzinger ... 1635 bp Randia ngoyensis QL-PLN-00-007 567 bp View
MK165265.1 nt Randia nigricans voucher Mouly 23 (... 1640 bp Randia nigricans QL-PLN-00-007 573 bp View
MK165266.1 nt Randia pancheriana voucher Mouly 85... 1634 bp Randia pancheriana QL-PLN-00-007 567 bp View
MK165267.1 nt Randia pseudoterminalis voucher Mun... 1620 bp Randia pseudoterminalis QL-PLN-00-007 567 bp View
MK165270.1 nt Aidia abeidii voucher Luke 8317 (S)... 1683 bp Aidia abeidii QL-PLN-00-007 567 bp View
MK165273.1 nt Catunaregam nilotica voucher de Wil... 1693 bp Catunaregam nilotica QL-PLN-00-007 567 bp View
MK165275.1 nt Duperrea pavettifolia voucher Avery... 1678 bp Duperrea pavettifolia QL-PLN-00-007 567 bp View
MK165276.1 nt Gardenia aubryi voucher Mouly 147 (... 1618 bp Gardenia aubryi QL-PLN-00-007 550 bp View
MK165277.1 nt Gardenia jasminoides voucher Mouly ... 1667 bp Gardenia jasminoides QL-PLN-00-007 550 bp View
MK165278.1 nt Gardenia oudiepe voucher Mouly 201 ... 1537 bp Gardenia oudiepe QL-PLN-00-007 550 bp View
MK165279.1 nt Gardenia urvillei voucher Mouly 842... 1649 bp Gardenia urvillei QL-PLN-00-007 550 bp View
MK234901.1 nt Persicaria pubescens chloroplast, c... 159502 bp Persicaria pubescens QL-PLN-00-007 593 bp View
MK234902.1 nt Persicaria hydropiper chloroplast, ... 159054 bp Persicaria hydropiper QL-PLN-00-007 593 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.