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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MH593344.1 nt Fritillaria cirrhosa isolate GZDQ2-... 151605 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
MH593345.1 nt Fritillaria cirrhosa isolate GZDQ3-... 152035 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
MH593346.1 nt Fritillaria cirrhosa isolate GZDQ3-... 152035 bp Fritillaria cirrhosa QL-PLN-00-007 607 bp View
MH593347.1 nt Fritillaria przewalskii isolate GZD... 152054 bp Fritillaria przewalskii QL-PLN-00-007 607 bp View
MH593348.1 nt Fritillaria przewalskii isolate GZD... 151955 bp Fritillaria przewalskii QL-PLN-00-007 607 bp View
MH593349.1 nt Fritillaria przewalskii isolate GZD... 151960 bp Fritillaria przewalskii QL-PLN-00-007 607 bp View
MH593350.1 nt Fritillaria unibracteata isolate GZ... 151057 bp Fritillaria unibracteata QL-PLN-00-007 607 bp View
MH593351.1 nt Fritillaria unibracteata isolate GZ... 151012 bp Fritillaria unibracteata QL-PLN-00-007 607 bp View
MH593352.1 nt Fritillaria unibracteata isolate GZ... 151078 bp Fritillaria unibracteata QL-PLN-00-007 607 bp View
MH593353.1 nt Fritillaria delavayi isolate GZDQ10... 151853 bp Fritillaria delavayi QL-PLN-00-007 607 bp View
MH593354.1 nt Fritillaria delavayi isolate GZDQ10... 151854 bp Fritillaria delavayi QL-PLN-00-007 607 bp View
MH593355.1 nt Fritillaria delavayi isolate GZDQ10... 151854 bp Fritillaria delavayi QL-PLN-00-007 607 bp View
MH593356.1 nt Fritillaria taipaiensis isolate GZD... 151518 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MH593357.1 nt Fritillaria taipaiensis isolate GZD... 151741 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MH593358.1 nt Fritillaria taipaiensis isolate GZD... 151741 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MH593359.1 nt Fritillaria taipaiensis isolate GZD... 151741 bp Fritillaria taipaiensis QL-PLN-00-007 607 bp View
MH593360.1 nt Fritillaria thunbergii isolate GZDQ... 152160 bp Fritillaria thunbergii QL-PLN-00-007 607 bp View
MH593361.1 nt Fritillaria thunbergii isolate GZDQ... 152160 bp Fritillaria thunbergii QL-PLN-00-007 607 bp View
MH593362.1 nt Fritillaria thunbergii isolate GZDQ... 152160 bp Fritillaria thunbergii QL-PLN-00-007 607 bp View
MH593363.1 nt Fritillaria anhuiensis isolate GZDQ... 152119 bp Fritillaria anhuiensis QL-PLN-00-007 607 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.