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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF431150.1 nt Saccharum spontaneum isolate MPTH97... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431151.1 nt Saccharum spontaneum isolate MPTH97... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431152.1 nt Saccharum spontaneum isolate MPTH97... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431153.1 nt Saccharum spontaneum isolate MPTH98... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431154.1 nt Saccharum officinarum isolate Munto... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431155.1 nt Saccharum barberi isolate Nargori t... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431156.1 nt Saccharum officinarum isolate NG21_... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431157.1 nt Saccharum edule isolate NG77_010 tR... 526 bp Saccharum edule QL-PLN-00-007 526 bp View
MF431158.1 nt Saccharum officinarum isolate NG77_... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431159.1 nt Saccharum robustum isolate NH70_015... 526 bp Saccharum robustum QL-PLN-00-007 526 bp View
MF431160.1 nt Saccharum officinarum isolate OiDen... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431161.1 nt Saccharum spontaneum isolate PCANOR... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431162.1 nt Saccharum barberi isolate Rena tRNA... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431163.1 nt Saccharum barberi isolate Ruckri tR... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431164.1 nt Saccharum spontaneum isolate S001 t... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431165.1 nt Saccharum spontaneum isolate S66_12... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431166.1 nt Saccharum officinarum isolate Saipa... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431167.1 nt Saccharum spontaneum isolate SaudiA... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431168.1 nt Saccharum barberi isolate Semari tR... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431169.1 nt Saccharum spontaneum isolate SES114... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.