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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MF431130.1 nt Saccharum hybrid cultivar isolate G... 526 bp Saccharum hybrid cultivar QL-PLN-00-007 526 bp View
MF431131.1 nt Saccharum hybrid cultivar isolate G... 526 bp Saccharum hybrid cultivar QL-PLN-00-007 526 bp View
MF431132.1 nt Saccharum robustum isolate IN84_045... 526 bp Saccharum robustum QL-PLN-00-007 526 bp View
MF431133.1 nt Saccharum robustum isolate IN84_076... 526 bp Saccharum robustum QL-PLN-00-007 526 bp View
MF431134.1 nt Saccharum spontaneum isolate IND81_... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431135.1 nt Saccharum spontaneum isolate IND81_... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431136.1 nt Saccharum spontaneum isolate IND81_... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431137.1 nt Saccharum spontaneum isolate IND82_... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431138.1 nt Saccharum barberi isolate Kalari tR... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431139.1 nt Saccharum barberi isolate Katha tRN... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431140.1 nt Saccharum barberi isolate Khagzi tR... 526 bp Saccharum barberi QL-PLN-00-007 526 bp View
MF431141.1 nt Saccharum officinarum isolate LaPur... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431142.1 nt Saccharum sinense isolate Mcikum tR... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431143.1 nt Saccharum officinarum isolate Mento... 526 bp Saccharum officinarum QL-PLN-00-007 526 bp View
MF431144.1 nt Saccharum sinense isolate Merthi tR... 526 bp Saccharum sinense QL-PLN-00-007 526 bp View
MF431145.1 nt Saccharum spontaneum isolate MOL103... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431146.1 nt Saccharum robustum isolate Molokai5... 526 bp Saccharum robustum QL-PLN-00-007 526 bp View
MF431147.1 nt Saccharum spontaneum isolate MPTH97... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431148.1 nt Saccharum spontaneum isolate MPTH97... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View
MF431149.1 nt Saccharum spontaneum isolate MPTH97... 526 bp Saccharum spontaneum QL-PLN-00-007 526 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.