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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LT558595.1 nt Brachypodium distachyon chloroplast... 135191 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558596.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558597.1 nt Brachypodium distachyon chloroplast... 135202 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558598.1 nt Brachypodium distachyon chloroplast... 135049 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558599.1 nt Brachypodium distachyon chloroplast... 135133 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558600.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558601.1 nt Brachypodium distachyon chloroplast... 135185 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558602.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558603.1 nt Brachypodium hybridum chloroplast g... 136326 bp Brachypodium distachyon QL-PLN-00-007 612 bp View
LT558604.1 nt Brachypodium distachyon chloroplast... 135141 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558605.1 nt Brachypodium distachyon chloroplast... 135159 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558606.1 nt Brachypodium distachyon chloroplast... 135078 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558607.1 nt Brachypodium distachyon chloroplast... 135156 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558608.1 nt Brachypodium distachyon chloroplast... 135157 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558609.1 nt Brachypodium distachyon chloroplast... 135157 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558610.1 nt Brachypodium distachyon chloroplast... 135186 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558611.1 nt Brachypodium distachyon chloroplast... 135044 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558612.1 nt Brachypodium distachyon chloroplast... 135044 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558613.1 nt Brachypodium distachyon chloroplast... 135149 bp Brachypodium distachyon QL-PLN-00-007 616 bp View
LT558614.1 nt Brachypodium distachyon chloroplast... 135161 bp Brachypodium distachyon QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.