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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815631.1 nt Tarenna asiatica voucher Lundqvist ... 1660 bp Tarenna asiatica QL-PLN-00-007 567 bp View
KJ815632.1 nt Tarenna bridsoniana voucher Luke 10... 1688 bp Tarenna bridsoniana QL-PLN-00-007 567 bp View
KJ815633.1 nt Tarenna burttii voucher Kuchar 2391... 1683 bp Tarenna burttii QL-PLN-00-007 567 bp View
KJ815635.1 nt Tarenna grevei voucher Razafimandim... 1698 bp Tarenna grevei QL-PLN-00-007 567 bp View
KJ815636.1 nt Tarenna grevei voucher Karehed et a... 1671 bp Tarenna grevei QL-PLN-00-007 567 bp View
KJ815637.1 nt Tarenna grevei voucher Razafimandim... 1654 bp Tarenna grevei QL-PLN-00-007 567 bp View
KJ815638.1 nt Tarenna grevei voucher Mouly 624 (P... 1678 bp Tarenna grevei QL-PLN-00-007 567 bp View
KJ815639.1 nt Tarenna leioloba voucher Mouly 174 ... 1675 bp Tarenna leioloba QL-PLN-00-007 567 bp View
KJ815640.1 nt Tarenna pavettoides voucher Brand &... 1676 bp Tarenna pavettoides QL-PLN-00-007 567 bp View
KJ815641.1 nt Tarenna quadrangularis voucher Borh... 1686 bp Tarenna quadrangularis QL-PLN-00-007 567 bp View
KJ815642.1 nt Tarenna rhypalostigma voucher Munzi... 1659 bp Tarenna rhypalostigma QL-PLN-00-007 567 bp View
KJ815643.1 nt Tarenna roseicosta voucher Luke 917... 1683 bp Tarenna roseicosta QL-PLN-00-007 567 bp View
KJ815644.1 nt Tarenna sambucina voucher Mouly 364... 1665 bp Tarenna sambucina QL-PLN-00-007 567 bp View
KJ815645.1 nt Tarenna sechellensis voucher Bremer... 1681 bp Tarenna sechellensis QL-PLN-00-007 567 bp View
KJ815646.1 nt Tarenna sp. Larsen et al. 43094 trn... 1670 bp Tarenna sp. Larsen et al. 43094 QL-PLN-00-007 567 bp View
KJ815647.1 nt Tarenna sp. Klackenberg 1250 trnT-t... 1670 bp Tarenna sp. Klackenberg 1250 QL-PLN-00-007 567 bp View
KJ815650.1 nt Tarenna thouarsiana voucher Razafim... 1655 bp Tarenna thouarsiana QL-PLN-00-007 567 bp View
KJ815651.1 nt Tarenna thouarsiana voucher Kainula... 1661 bp Tarenna thouarsiana QL-PLN-00-007 567 bp View
KJ815652.1 nt Tarenna uniflora voucher Kainulaine... 1670 bp Tarenna uniflora QL-PLN-00-007 567 bp View
KJ825856.1 nt Phragmites australis chloroplast, c... 137614 bp Phragmites australis QL-PLN-00-007 617 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.