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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KJ815611.1 nt Coptosperma zygoon voucher Wild 229... 1669 bp Coptosperma zygoon QL-PLN-00-007 567 bp View
KJ815612.1 nt Tarenna malacophylla voucher Razafi... 1682 bp Helictosperma malacophylla QL-PLN-00-007 567 bp View
KJ815613.1 nt Homollea sp. Bremer et al. 5125 trn... 1681 bp Homollea sp. Bremer et al. 5125 QL-PLN-00-007 567 bp View
KJ815614.1 nt Homollea perrieri voucher Morat 470... 1682 bp Homollea perrieri QL-PLN-00-007 567 bp View
KJ815615.1 nt Homollea sp. Andriambololonera et a... 1675 bp Homollea sp. Andriambololonera et al. 171 QL-PLN-00-007 567 bp View
KJ815616.1 nt Pavetteae sp. Bremer et al. 5168 tr... 1668 bp Pavetteae sp. Bremer et al. 5168 QL-PLN-00-007 567 bp View
KJ815617.1 nt Paracephaelis sericea voucher Razaf... 1569 bp Paracephaelis sericea QL-PLN-00-007 567 bp View
KJ815618.1 nt Paracephaelis sp. Razakamalala RZK ... 1680 bp Paracephaelis sp. Razakamalala RZK 6293 QL-PLN-00-007 567 bp View
KJ815619.1 nt Paracephaelis cinerea voucher Breme... 1631 bp Paracephaelis cinerea QL-PLN-00-007 567 bp View
KJ815620.1 nt Paracephaelis cinerea voucher De Bl... 1668 bp Paracephaelis cinerea QL-PLN-00-007 567 bp View
KJ815621.1 nt Paracephaelis cinerea voucher Mouly... 1680 bp Paracephaelis cinerea QL-PLN-00-007 567 bp View
KJ815622.1 nt Paracephaelis saxatilis voucher Raz... 1626 bp Paracephaelis saxatilis QL-PLN-00-007 567 bp View
KJ815623.1 nt Paracephaelis tiliacea voucher Kain... 1628 bp Paracephaelis tiliacea QL-PLN-00-007 567 bp View
KJ815624.1 nt Paracephaelis trichantha voucher Fr... 1661 bp Paracephaelis trichantha QL-PLN-00-007 567 bp View
KJ815625.1 nt Paracephaelis sp. Razakamalala RZK ... 1707 bp Paracephaelis sp. Razakamalala RZK 6400 QL-PLN-00-007 567 bp View
KJ815626.1 nt Pavetteae sp. Razafimandimbison et ... 1633 bp Pavetteae sp. Razafimandimbison et al. 1239 QL-PLN-00-007 567 bp View
KJ815627.1 nt Robbrechtia milleri voucher Bremer ... 1661 bp Robbrechtia milleri QL-PLN-00-007 567 bp View
KJ815628.1 nt Schizenterospermum majungense vouch... 1682 bp Schizenterospermum majungense QL-PLN-00-007 567 bp View
KJ815629.1 nt Schizenterospermum rotundifolium vo... 1621 bp Schizenterospermum rotundifolium QL-PLN-00-007 567 bp View
KJ815630.1 nt Tarenna alleizettei voucher Karehed... 1672 bp Tarenna alleizettei QL-PLN-00-007 567 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.