European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JN005833.1 nt Oryza rufipogon voucher AusTRCF 309... 134557 bp Oryza rufipogon QL-PLN-00-007 615 bp View
JN030950.1 nt Poa annua isolate AZ2 trnT-trnL int... 1705 bp Poa annua QL-PLN-00-007 616 bp View
JN030951.1 nt Poa annua isolate CA1 trnT-trnL int... 1709 bp Poa annua QL-PLN-00-007 616 bp View
JN030952.1 nt Poa annua isolate CA2 trnT-trnL int... 1716 bp Poa annua QL-PLN-00-007 616 bp View
JN030953.1 nt Poa annua isolate MD1 trnT-trnL int... 1779 bp Poa annua QL-PLN-00-007 616 bp View
JN030954.1 nt Poa annua isolate MD2 trnT-trnL int... 1772 bp Poa annua QL-PLN-00-007 616 bp View
JN030955.1 nt Poa annua isolate NY1 trnT-trnL int... 1714 bp Poa annua QL-PLN-00-007 616 bp View
JN030956.1 nt Poa annua isolate NY2 trnT-trnL int... 1720 bp Poa annua QL-PLN-00-007 616 bp View
JN030957.1 nt Poa annua isolate PA1 trnT-trnL int... 1731 bp Poa annua QL-PLN-00-007 616 bp View
JN030958.1 nt Poa annua isolate PA2 trnT-trnL int... 1713 bp Poa annua QL-PLN-00-007 616 bp View
JN030959.1 nt Poa annua isolate QC1 trnT-trnL int... 1712 bp Poa annua QL-PLN-00-007 616 bp View
JN030960.1 nt Poa annua isolate QC2 trnT-trnL int... 1773 bp Poa annua QL-PLN-00-007 616 bp View
JN030961.1 nt Poa annua isolate SCT1 trnT-trnL in... 1722 bp Poa annua QL-PLN-00-007 616 bp View
JN030962.1 nt Poa annua isolate SCT2 trnT-trnL in... 1718 bp Poa annua QL-PLN-00-007 616 bp View
JN030963.1 nt Poa annua isolate SWE1 trnT-trnL in... 1759 bp Poa annua QL-PLN-00-007 616 bp View
JN030964.1 nt Poa annua isolate SWE2 trnT-trnL in... 1773 bp Poa annua QL-PLN-00-007 616 bp View
JN030965.1 nt Poa annua isolate WA1 trnT-trnL int... 1737 bp Poa annua QL-PLN-00-007 616 bp View
JN030966.1 nt Poa annua isolate WA2 trnT-trnL int... 1731 bp Poa annua QL-PLN-00-007 616 bp View
JN030967.1 nt Poa annua isolate WAL1 trnT-trnL in... 1772 bp Poa annua QL-PLN-00-007 616 bp View
JN030968.1 nt Poa annua isolate WAL2 trnT-trnL in... 1711 bp Poa annua QL-PLN-00-007 616 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.