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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 7034 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HG998513.1 nt Oryza rufipogon genome assembly, or... 134500 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998514.1 nt Oryza rufipogon genome assembly, or... 134541 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998515.1 nt Oryza rufipogon genome assembly, or... 134514 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998516.1 nt Oryza rufipogon genome assembly, or... 134539 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998517.1 nt Oryza rufipogon genome assembly, or... 134515 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998518.1 nt Oryza rufipogon genome assembly, or... 134541 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998519.1 nt Oryza rufipogon genome assembly, or... 134516 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998520.1 nt Oryza rufipogon genome assembly, or... 134541 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998521.1 nt Oryza rufipogon genome assembly, or... 134515 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998522.1 nt Oryza rufipogon genome assembly, or... 134536 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998523.1 nt Oryza rufipogon genome assembly, or... 134583 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998524.1 nt Oryza rufipogon genome assembly, or... 134494 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998525.1 nt Oryza meridionalis genome assembly,... 134548 bp Oryza meridionalis QL-PLN-00-007 615 bp View
HG998526.1 nt Oryza rufipogon genome assembly, or... 134511 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998527.1 nt Oryza rufipogon genome assembly, or... 134495 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998528.1 nt Oryza rufipogon genome assembly, or... 134538 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998529.1 nt Oryza rufipogon genome assembly, or... 134503 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998530.1 nt Oryza rufipogon genome assembly, or... 134590 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998531.1 nt Oryza rufipogon genome assembly, or... 134549 bp Oryza rufipogon QL-PLN-00-007 615 bp View
HG998532.1 nt Oryza rufipogon genome assembly, or... 134515 bp Oryza rufipogon QL-PLN-00-007 615 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.