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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2902 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LY336306.1 emblrelpat KR 1020160111915-A/36: PRODUCTION O... 36011 bp synthetic construct QT-ELE-00-002 68 bp View
LY336307.1 emblrelpat KR 1020160111915-A/37: PRODUCTION O... 38299 bp synthetic construct QL-ELE-00-025 108 bp View
LY336307.1 emblrelpat KR 1020160111915-A/37: PRODUCTION O... 38299 bp synthetic construct QT-ELE-00-002 68 bp View
LY336308.1 emblrelpat KR 1020160111915-A/38: PRODUCTION O... 36021 bp synthetic construct QL-ELE-00-025 108 bp View
LY336308.1 emblrelpat KR 1020160111915-A/38: PRODUCTION O... 36021 bp synthetic construct QT-ELE-00-002 68 bp View
LY410069.1 emblrelpat KR 1020160134709-A/9: TRANSGENIC MA... 6762 bp synthetic construct QL-ELE-00-025 108 bp View
LY410069.1 emblrelpat KR 1020160134709-A/9: TRANSGENIC MA... 6762 bp synthetic construct QT-ELE-00-002 68 bp View
LY410070.1 emblrelpat KR 1020160134709-A/10: TRANSGENIC M... 9259 bp synthetic construct QL-ELE-00-025 108 bp View
LY410070.1 emblrelpat KR 1020160134709-A/10: TRANSGENIC M... 9259 bp synthetic construct QT-ELE-00-002 68 bp View
LY520043.1 emblrelpat KR 1020170098810-A/5: GENERATION OF... 1828 bp synthetic construct QL-ELE-00-025 108 bp View
LY520043.1 emblrelpat KR 1020170098810-A/5: GENERATION OF... 1828 bp synthetic construct QT-ELE-00-002 68 bp View
LY536291.1 emblrelpat KR 1020170116124-A/6: HERBICIDE RES... 552 bp Streptomyces viridochromogenes QL-ELE-00-025 108 bp View
LY536291.1 emblrelpat KR 1020170116124-A/6: HERBICIDE RES... 552 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
LY585621.1 emblrelpat KR 1020180008884-A/53: LOWERING SAT... 13227 bp synthetic construct QL-ELE-00-025 108 bp View
LY585621.1 emblrelpat KR 1020180008884-A/53: LOWERING SAT... 13227 bp synthetic construct QT-ELE-00-002 68 bp View
LY585628.1 emblrelpat KR 1020180008884-A/60: LOWERING SAT... 18713 bp synthetic construct QL-ELE-00-025 108 bp View
LY585628.1 emblrelpat KR 1020180008884-A/60: LOWERING SAT... 18713 bp synthetic construct QT-ELE-00-002 68 bp View
LY585629.1 emblrelpat KR 1020180008884-A/61: LOWERING SAT... 14524 bp synthetic construct QL-ELE-00-025 108 bp View
LY585629.1 emblrelpat KR 1020180008884-A/61: LOWERING SAT... 14524 bp synthetic construct QT-ELE-00-002 68 bp View
LY585630.1 emblrelpat KR 1020180008884-A/62: LOWERING SAT... 18422 bp synthetic construct QL-ELE-00-025 108 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.