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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2902 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HZ035114.1 emblrelpat JP 2015508668-A/7: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
HZ035116.1 emblrelpat JP 2015508668-A/9: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QL-ELE-00-025 108 bp View
HZ035116.1 emblrelpat JP 2015508668-A/9: SUGARCANE BACILL... 1828 bp Streptomyces viridochromogenes QT-ELE-00-002 68 bp View
HZ183242.1 emblrelpat JP 2015516162-A/385: METHODS AND CO... 7390 bp synthetic construct QL-ELE-00-025 108 bp View
HZ183242.1 emblrelpat JP 2015516162-A/385: METHODS AND CO... 7390 bp synthetic construct QT-ELE-00-002 68 bp View
HZ388519.1 emblrelpat JP 2015522283-A/3: INSECT RESISTANT... 12381 bp synthetic construct QL-ELE-00-025 108 bp View
HZ388519.1 emblrelpat JP 2015522283-A/3: INSECT RESISTANT... 12381 bp synthetic construct QT-ELE-00-002 68 bp View
HZ388530.1 emblrelpat JP 2015522283-A/14: INSECT RESISTAN... 15170 bp synthetic construct QL-ELE-00-025 108 bp View
HZ388530.1 emblrelpat JP 2015522283-A/14: INSECT RESISTAN... 15170 bp synthetic construct QT-ELE-00-002 68 bp View
HZ457647.1 emblrelpat JP 2015226537-A/55: TARGETED INTEGR... 2349 bp synthetic construct QL-ELE-00-025 108 bp View
HZ457647.1 emblrelpat JP 2015226537-A/55: TARGETED INTEGR... 2349 bp synthetic construct QT-ELE-00-002 68 bp View
HZ539147.1 emblrelpat JP 2016500268-A/51: Precision Gene ... 4431 bp synthetic construct QL-ELE-00-025 108 bp View
HZ539147.1 emblrelpat JP 2016500268-A/51: Precision Gene ... 4431 bp synthetic construct QT-ELE-00-002 68 bp View
HZ787295.1 emblrelpat JP 2016502853-A/2: Improved Soybean... 1828 bp synthetic construct QL-ELE-00-025 108 bp View
HZ787295.1 emblrelpat JP 2016502853-A/2: Improved Soybean... 1828 bp synthetic construct QT-ELE-00-002 68 bp View
HZ787297.1 emblrelpat JP 2016502853-A/4: Improved Soybean... 1818 bp synthetic construct QL-ELE-00-025 108 bp View
HZ787297.1 emblrelpat JP 2016502853-A/4: Improved Soybean... 1818 bp synthetic construct QT-ELE-00-002 68 bp View
HZ787299.1 emblrelpat JP 2016502853-A/6: Improved Soybean... 1818 bp synthetic construct QL-ELE-00-025 108 bp View
HZ787299.1 emblrelpat JP 2016502853-A/6: Improved Soybean... 1818 bp synthetic construct QT-ELE-00-002 68 bp View
HZ787301.1 emblrelpat JP 2016502856-A/2: Improved Soybean... 1828 bp synthetic construct QL-ELE-00-025 108 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.