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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2902 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HW254239.1 emblrelpat JP 2013514780-A/3: ENDPOINT TAQMAN ... 11361 bp synthetic construct QL-ELE-00-025 108 bp View
HW254239.1 emblrelpat JP 2013514780-A/3: ENDPOINT TAQMAN ... 11361 bp synthetic construct QL-ELE-00-025 108 bp View
HW254239.1 emblrelpat JP 2013514780-A/3: ENDPOINT TAQMAN ... 11361 bp synthetic construct QL-ELE-00-025 108 bp View
HW254239.1 emblrelpat JP 2013514780-A/3: ENDPOINT TAQMAN ... 11361 bp synthetic construct QT-ELE-00-002 68 bp View
HW315902.1 emblrelpat JP 2013529086-A/30: Production of D... 33034 bp synthetic construct QL-ELE-00-025 108 bp View
HW315902.1 emblrelpat JP 2013529086-A/30: Production of D... 33034 bp synthetic construct QT-ELE-00-002 68 bp View
HW315903.1 emblrelpat JP 2013529086-A/31: Production of D... 33003 bp synthetic construct QL-ELE-00-025 108 bp View
HW315903.1 emblrelpat JP 2013529086-A/31: Production of D... 33003 bp synthetic construct QT-ELE-00-002 68 bp View
HW315904.1 emblrelpat JP 2013529086-A/32: Production of D... 33951 bp synthetic construct QL-ELE-00-025 108 bp View
HW315904.1 emblrelpat JP 2013529086-A/32: Production of D... 33951 bp synthetic construct QT-ELE-00-002 68 bp View
HW315906.1 emblrelpat JP 2013529086-A/34: Production of D... 38811 bp synthetic construct QL-ELE-00-025 108 bp View
HW315906.1 emblrelpat JP 2013529086-A/34: Production of D... 38811 bp synthetic construct QT-ELE-00-002 68 bp View
HW315907.1 emblrelpat JP 2013529086-A/35: Production of D... 35302 bp synthetic construct QL-ELE-00-025 108 bp View
HW315907.1 emblrelpat JP 2013529086-A/35: Production of D... 35302 bp synthetic construct QT-ELE-00-002 68 bp View
HW315908.1 emblrelpat JP 2013529086-A/36: Production of D... 35154 bp synthetic construct QL-ELE-00-025 108 bp View
HW315908.1 emblrelpat JP 2013529086-A/36: Production of D... 35154 bp synthetic construct QT-ELE-00-002 68 bp View
HW315909.1 emblrelpat JP 2013529086-A/37: Production of D... 36102 bp synthetic construct QL-ELE-00-025 108 bp View
HW315909.1 emblrelpat JP 2013529086-A/37: Production of D... 36102 bp synthetic construct QT-ELE-00-002 68 bp View
HW315910.1 emblrelpat JP 2013529086-A/38: Production of D... 39183 bp synthetic construct QL-ELE-00-025 108 bp View
HW315910.1 emblrelpat JP 2013529086-A/38: Production of D... 39183 bp synthetic construct QT-ELE-00-002 68 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.