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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 1110 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
JA834294.1 emblrelpat Sequence 170 from Patent EP2471355. 1394 bp synthetic construct QT-ELE-00-004 82 bp View
JA834295.1 emblrelpat Sequence 171 from Patent EP2471355. 3158 bp synthetic construct QL-ELE-00-024 87 bp View
JA834295.1 emblrelpat Sequence 171 from Patent EP2471355. 3158 bp synthetic construct QT-ELE-00-001 79 bp View
JA834295.1 emblrelpat Sequence 171 from Patent EP2471355. 3158 bp synthetic construct QT-ELE-00-004 82 bp View
JA834295.1 emblrelpat Sequence 171 from Patent EP2471355. 3158 bp synthetic construct QT-ELE-00-004 82 bp View
JA868502.1 emblrelpat Sequence 2067 from Patent EP2304030. 8504 bp synthetic construct QL-ELE-00-024 87 bp View
JA868502.1 emblrelpat Sequence 2067 from Patent EP2304030. 8504 bp synthetic construct QT-ELE-00-001 79 bp View
JA868502.1 emblrelpat Sequence 2067 from Patent EP2304030. 8504 bp synthetic construct QT-ELE-00-001 79 bp View
JA868502.1 emblrelpat Sequence 2067 from Patent EP2304030. 8504 bp synthetic construct QT-ELE-00-004 82 bp View
JA868502.1 emblrelpat Sequence 2067 from Patent EP2304030. 8504 bp synthetic construct QT-ELE-00-004 82 bp View
JA868502.1 emblrelpat Sequence 2067 from Patent EP2304030. 8504 bp synthetic construct QT-ELE-00-004 82 bp View
JB986234.1 emblrelpat Sequence 84 from Patent WO2013102762. 11332 bp synthetic construct QL-ELE-00-024 87 bp View
JB986234.1 emblrelpat Sequence 84 from Patent WO2013102762. 11332 bp synthetic construct QT-ELE-00-001 79 bp View
JB986234.1 emblrelpat Sequence 84 from Patent WO2013102762. 11332 bp synthetic construct QT-ELE-00-004 82 bp View
JB986235.1 emblrelpat Sequence 85 from Patent WO2013102762. 13627 bp synthetic construct QL-ELE-00-024 87 bp View
JB986235.1 emblrelpat Sequence 85 from Patent WO2013102762. 13627 bp synthetic construct QT-ELE-00-001 79 bp View
JB986235.1 emblrelpat Sequence 85 from Patent WO2013102762. 13627 bp synthetic construct QT-ELE-00-004 82 bp View
JB986235.1 emblrelpat Sequence 85 from Patent WO2013102762. 13627 bp synthetic construct QT-ELE-00-004 82 bp View
JN400383.1 nt Expression vector pMON93914, comple... 11397 bp Expression vector pMON93914 QL-ELE-00-024 87 bp View
JN400383.1 nt Expression vector pMON93914, comple... 11397 bp Expression vector pMON93914 QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.