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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 4639 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ658217.1 nt Binary vector pCAMBIA1300-FAD2b, co... 10130 bp Binary vector pCAMBIA1300-FAD2b QT-ELE-00-004 82 bp View
DQ658217.1 nt Binary vector pCAMBIA1300-FAD2b, co... 10130 bp Binary vector pCAMBIA1300-FAD2b QT-ELE-00-004 82 bp View
DQ989355.1 nt Gene trapping Ds/T-DNA vector pDsG8... 16844 bp Gene trapping Ds/T-DNA vector pDsG8 QL-ELE-00-023 137 bp View
DQ989355.1 nt Gene trapping Ds/T-DNA vector pDsG8... 16844 bp Gene trapping Ds/T-DNA vector pDsG8 QT-ELE-00-001 79 bp View
DQ989355.1 nt Gene trapping Ds/T-DNA vector pDsG8... 16844 bp Gene trapping Ds/T-DNA vector pDsG8 QT-ELE-00-004 82 bp View
DQ989355.1 nt Gene trapping Ds/T-DNA vector pDsG8... 16844 bp Gene trapping Ds/T-DNA vector pDsG8 QT-ELE-00-004 82 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QL-ELE-00-023 137 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QT-ELE-00-001 79 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QT-ELE-00-001 79 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QT-ELE-00-004 82 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QT-ELE-00-004 82 bp View
EF042581.1 nt Cloning vector pCAMBIA5105, complet... 49756 bp Cloning vector pCAMBIA5105 QT-ELE-00-004 82 bp View
EF426459.1 nt Binary gene-trap vector piGL, compl... 16466 bp Binary gene-trap vector piGL QL-ELE-00-023 137 bp View
EF426459.1 nt Binary gene-trap vector piGL, compl... 16466 bp Binary gene-trap vector piGL QT-ELE-00-001 79 bp View
EF426459.1 nt Binary gene-trap vector piGL, compl... 16466 bp Binary gene-trap vector piGL QT-ELE-00-004 82 bp View
EF426459.1 nt Binary gene-trap vector piGL, compl... 16466 bp Binary gene-trap vector piGL QT-ELE-00-004 82 bp View
EF546437.1 nt Binary vector pGFPGUSplus, complete... 13701 bp Binary vector pGFPGUSplus QL-ELE-00-023 137 bp View
EF546437.1 nt Binary vector pGFPGUSplus, complete... 13701 bp Binary vector pGFPGUSplus QT-ELE-00-001 79 bp View
EF546437.1 nt Binary vector pGFPGUSplus, complete... 13701 bp Binary vector pGFPGUSplus QT-ELE-00-001 79 bp View
EF546437.1 nt Binary vector pGFPGUSplus, complete... 13701 bp Binary vector pGFPGUSplus QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.