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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 731 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QT-ELE-00-001 79 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QT-ELE-00-004 82 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QT-ELE-00-004 82 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QL-ELE-00-023 137 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QL-ELE-00-026 60 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QT-ELE-00-001 79 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QT-ELE-00-004 82 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QT-ELE-00-004 82 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-023 137 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-026 60 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QT-ELE-00-001 79 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QT-ELE-00-004 82 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QT-ELE-00-004 82 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QL-ELE-00-023 137 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QL-ELE-00-026 60 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QT-ELE-00-001 79 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QT-ELE-00-004 82 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QT-ELE-00-004 82 bp View
LP994898.1 emblrelpat Sequence 10 from Patent WO2017136668. 11031 bp synthetic construct QL-ELE-00-023 137 bp View
LP994898.1 emblrelpat Sequence 10 from Patent WO2017136668. 11031 bp synthetic construct QL-ELE-00-023 137 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.