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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 731 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-026 60 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-001 79 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-001 79 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QL-ELE-00-023 137 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QL-ELE-00-026 60 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QT-ELE-00-001 79 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QT-ELE-00-004 82 bp View
KP795973.1 nt Binary vector pCAMBIA-BAR, complete... 8428 bp Binary vector pCAMBIA-BAR QT-ELE-00-004 82 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QL-ELE-00-023 137 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QL-ELE-00-026 60 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QT-ELE-00-001 79 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QT-ELE-00-001 79 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QT-ELE-00-004 82 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QT-ELE-00-004 82 bp View
KP826773.1 nt Binary vector PC-GW-Bar, complete s... 11483 bp Binary vector PC-GW-Bar QT-ELE-00-004 82 bp View
KP836314.1 nt Plant binary expression vector pCaS... 12184 bp Plant binary expression vector pCaS1 QL-ELE-00-023 137 bp View
KP836314.1 nt Plant binary expression vector pCaS... 12184 bp Plant binary expression vector pCaS1 QL-ELE-00-026 60 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.