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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 693 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF206149.1 nt Plant binary expression and subcell... 14175 bp Plant binary expression and subcellualr localization vector pCRG1301 QL-ELE-00-024 87 bp View
KF206150.1 nt Plant binary expression vector pCR3... 10016 bp Plant binary expression vector pCR3300 QL-ELE-00-023 137 bp View
KF206150.1 nt Plant binary expression vector pCR3... 10016 bp Plant binary expression vector pCR3300 QL-ELE-00-024 87 bp View
KF206151.1 nt Plant binary expression and subcell... 10754 bp Plant binary expression and subcellular localization vector pCRG3300 QL-ELE-00-023 137 bp View
KF206151.1 nt Plant binary expression and subcell... 10754 bp Plant binary expression and subcellular localization vector pCRG3300 QL-ELE-00-024 87 bp View
KF206152.1 nt Plant binary expression vector pCR3... 12907 bp Plant binary expression vector pCR3301 QL-ELE-00-023 137 bp View
KF206152.1 nt Plant binary expression vector pCR3... 12907 bp Plant binary expression vector pCR3301 QL-ELE-00-024 87 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-023 137 bp View
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QL-ELE-00-024 87 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-ELE-00-023 137 bp View
KF661330.1 nt Binary vector pKGFP::P85-P87::GUS e... 16294 bp Binary vector pKGFP::P85-P87::GUS QL-ELE-00-024 87 bp View
LF150999.1 emblrelpat JP 2016512048-A/7: ENGINEERING PLAN... 16818 bp synthetic construct QL-ELE-00-023 137 bp View
LF150999.1 emblrelpat JP 2016512048-A/7: ENGINEERING PLAN... 16818 bp synthetic construct QL-ELE-00-024 87 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-023 137 bp View
LP775013.1 emblrelpat Sequence 3 from Patent WO2018022574. 13176 bp synthetic construct QL-ELE-00-024 87 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QL-ELE-00-023 137 bp View
LP775014.1 emblrelpat Sequence 4 from Patent WO2018022574. 10601 bp synthetic construct QL-ELE-00-024 87 bp View
LQ493362.1 emblrelpat Sequence 1 from Patent WO2016075310. 60097 bp synthetic construct QL-ELE-00-023 137 bp View
LQ493362.1 emblrelpat Sequence 1 from Patent WO2016075310. 60097 bp synthetic construct QL-ELE-00-023 137 bp View
LQ493362.1 emblrelpat Sequence 1 from Patent WO2016075310. 60097 bp synthetic construct QL-ELE-00-024 87 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.