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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 693 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HL919925.1 emblrelpat Sequence 101 from patent US 9388437. 23777 bp unidentified QL-ELE-00-023 137 bp View
HL919925.1 emblrelpat Sequence 101 from patent US 9388437. 23777 bp unidentified QL-ELE-00-024 87 bp View
HL919925.1 emblrelpat Sequence 101 from patent US 9388437. 23777 bp unidentified QL-ELE-00-024 87 bp View
HL991169.1 emblrelpat Sequence 39 from patent US 9428757. 24356 bp unidentified QL-ELE-00-023 137 bp View
HL991169.1 emblrelpat Sequence 39 from patent US 9428757. 24356 bp unidentified QL-ELE-00-024 87 bp View
HL991170.1 emblrelpat Sequence 40 from patent US 9428757. 27539 bp unidentified QL-ELE-00-023 137 bp View
HL991170.1 emblrelpat Sequence 40 from patent US 9428757. 27539 bp unidentified QL-ELE-00-024 87 bp View
HL991255.1 emblrelpat Sequence 146 from patent US 9428757. 26802 bp unidentified QL-ELE-00-023 137 bp View
HL991255.1 emblrelpat Sequence 146 from patent US 9428757. 26802 bp unidentified QL-ELE-00-024 87 bp View
HM047294.1 nt Binary vector pBI121-ELEMENTS, comp... 16746 bp Binary vector pBI121-ELEMENTS QL-ELE-00-023 137 bp View
HM047294.1 nt Binary vector pBI121-ELEMENTS, comp... 16746 bp Binary vector pBI121-ELEMENTS QL-ELE-00-024 87 bp View
HV510651.1 emblrelpat JP 2011519552-A/9: Plant seed oil. 24356 bp synthetic construct QL-ELE-00-023 137 bp View
HV510651.1 emblrelpat JP 2011519552-A/9: Plant seed oil. 24356 bp synthetic construct QL-ELE-00-024 87 bp View
HV510652.1 emblrelpat JP 2011519552-A/10: Plant seed oil. 23990 bp synthetic construct QL-ELE-00-023 137 bp View
HV510652.1 emblrelpat JP 2011519552-A/10: Plant seed oil. 23990 bp synthetic construct QL-ELE-00-024 87 bp View
HV571985.1 emblrelpat JP 2012500640-A/52: Nucleic acids e... 28875 bp synthetic construct QL-ELE-00-023 137 bp View
HV571985.1 emblrelpat JP 2012500640-A/52: Nucleic acids e... 28875 bp synthetic construct QL-ELE-00-024 87 bp View
HV571985.1 emblrelpat JP 2012500640-A/52: Nucleic acids e... 28875 bp synthetic construct QL-ELE-00-024 87 bp View
HW099662.1 emblrelpat JP 2013502914-A/39: Regulatory nucl... 24356 bp synthetic construct QL-ELE-00-023 137 bp View
HW099662.1 emblrelpat JP 2013502914-A/39: Regulatory nucl... 24356 bp synthetic construct QL-ELE-00-024 87 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.