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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 693 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
HI929484.1 emblrelpat Sequence 16 from Patent WO2009130291. 24356 bp synthetic construct QL-ELE-00-024 87 bp View
HI929485.1 emblrelpat Sequence 17 from Patent WO2009130291. 23990 bp synthetic construct QL-ELE-00-023 137 bp View
HI929485.1 emblrelpat Sequence 17 from Patent WO2009130291. 23990 bp synthetic construct QL-ELE-00-024 87 bp View
HJ187157.1 emblrelpat Sequence 16 from patent US 8455035. 24356 bp unidentified QL-ELE-00-023 137 bp View
HJ187157.1 emblrelpat Sequence 16 from patent US 8455035. 24356 bp unidentified QL-ELE-00-024 87 bp View
HJ187158.1 emblrelpat Sequence 17 from patent US 8455035. 23990 bp unidentified QL-ELE-00-023 137 bp View
HJ187158.1 emblrelpat Sequence 17 from patent US 8455035. 23990 bp unidentified QL-ELE-00-024 87 bp View
HK028387.1 emblrelpat Sequence 137 from patent US 8785163. 28346 bp unidentified QL-ELE-00-023 137 bp View
HK028387.1 emblrelpat Sequence 137 from patent US 8785163. 28346 bp unidentified QL-ELE-00-023 137 bp View
HK028387.1 emblrelpat Sequence 137 from patent US 8785163. 28346 bp unidentified QL-ELE-00-024 87 bp View
HK037692.1 emblrelpat Sequence 35 from patent US 8785727. 26755 bp unidentified QL-ELE-00-023 137 bp View
HK037692.1 emblrelpat Sequence 35 from patent US 8785727. 26755 bp unidentified QL-ELE-00-024 87 bp View
HK037692.1 emblrelpat Sequence 35 from patent US 8785727. 26755 bp unidentified QL-ELE-00-024 87 bp View
HK780790.1 emblrelpat Sequence 71 from patent US 9090902. 28875 bp unidentified QL-ELE-00-023 137 bp View
HK780790.1 emblrelpat Sequence 71 from patent US 9090902. 28875 bp unidentified QL-ELE-00-024 87 bp View
HK780790.1 emblrelpat Sequence 71 from patent US 9090902. 28875 bp unidentified QL-ELE-00-024 87 bp View
HL286908.1 emblrelpat Sequence 2 from patent US 9181559. 20500 bp unidentified QL-ELE-00-023 137 bp View
HL286908.1 emblrelpat Sequence 2 from patent US 9181559. 20500 bp unidentified QL-ELE-00-024 87 bp View
HL286908.1 emblrelpat Sequence 2 from patent US 9181559. 20500 bp unidentified QL-ELE-00-024 87 bp View
HL286908.1 emblrelpat Sequence 2 from patent US 9181559. 20500 bp unidentified QL-ELE-00-024 87 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.