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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2925 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KF206153.1 nt Plant binary expression and subcell... 13645 bp Plant binary expression and subcellular localization vector pCRG3301 QT-ELE-00-004 82 bp View
KF719008.1 nt Cloning vector pGGF002, complete se... 4314 bp Cloning vector pGGF002 QL-ELE-00-022 69 bp View
KF719008.1 nt Cloning vector pGGF002, complete se... 4314 bp Cloning vector pGGF002 QL-ELE-00-026 60 bp View
KF719008.1 nt Cloning vector pGGF002, complete se... 4314 bp Cloning vector pGGF002 QT-ELE-00-001 79 bp View
KF719008.1 nt Cloning vector pGGF002, complete se... 4314 bp Cloning vector pGGF002 QT-ELE-00-004 82 bp View
KF974574.1 nt Binary vector pCLEAN-G265, complete... 8114 bp Binary vector pCLEAN-G265 QL-ELE-00-022 69 bp View
KF974574.1 nt Binary vector pCLEAN-G265, complete... 8114 bp Binary vector pCLEAN-G265 QL-ELE-00-026 60 bp View
KF974574.1 nt Binary vector pCLEAN-G265, complete... 8114 bp Binary vector pCLEAN-G265 QT-ELE-00-001 79 bp View
KF974574.1 nt Binary vector pCLEAN-G265, complete... 8114 bp Binary vector pCLEAN-G265 QT-ELE-00-004 82 bp View
KH496709.1 emblrelpat Sequence 25 from patent US 9534230. 11811 bp unidentified QL-ELE-00-022 69 bp View
KH496709.1 emblrelpat Sequence 25 from patent US 9534230. 11811 bp unidentified QL-ELE-00-026 60 bp View
KH496709.1 emblrelpat Sequence 25 from patent US 9534230. 11811 bp unidentified QT-ELE-00-001 79 bp View
KH496709.1 emblrelpat Sequence 25 from patent US 9534230. 11811 bp unidentified QT-ELE-00-004 82 bp View
KH496710.1 emblrelpat Sequence 26 from patent US 9534230. 11829 bp unidentified QL-ELE-00-022 69 bp View
KH496710.1 emblrelpat Sequence 26 from patent US 9534230. 11829 bp unidentified QL-ELE-00-026 60 bp View
KH496710.1 emblrelpat Sequence 26 from patent US 9534230. 11829 bp unidentified QT-ELE-00-001 79 bp View
KH496710.1 emblrelpat Sequence 26 from patent US 9534230. 11829 bp unidentified QT-ELE-00-004 82 bp View
KH496711.1 emblrelpat Sequence 27 from patent US 9534230. 12393 bp unidentified QL-ELE-00-022 69 bp View
KH496711.1 emblrelpat Sequence 27 from patent US 9534230. 12393 bp unidentified QL-ELE-00-026 60 bp View
KH496711.1 emblrelpat Sequence 27 from patent US 9534230. 12393 bp unidentified QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.