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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2925 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QL-ELE-00-026 60 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QT-ELE-00-001 79 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QT-ELE-00-001 79 bp View
DQ225749.1 nt Gene trapping Ds/T-DNA vector pNU39... 19277 bp Gene trapping Ds/T-DNA vector pNU393B2 QT-ELE-00-004 82 bp View
DQ370427.1 nt Binary vector pFYFPBT, complete seq... 9761 bp Binary vector pFYFPBT QL-ELE-00-022 69 bp View
DQ370427.1 nt Binary vector pFYFPBT, complete seq... 9761 bp Binary vector pFYFPBT QL-ELE-00-026 60 bp View
DQ370427.1 nt Binary vector pFYFPBT, complete seq... 9761 bp Binary vector pFYFPBT QT-ELE-00-001 79 bp View
DQ370427.1 nt Binary vector pFYFPBT, complete seq... 9761 bp Binary vector pFYFPBT QT-ELE-00-004 82 bp View
DQ370427.1 nt Binary vector pFYFPBT, complete seq... 9761 bp Binary vector pFYFPBT QT-ELE-00-004 82 bp View
DQ469639.1 nt Transformation vector pYW300, compl... 15368 bp Transformation vector pYW300 QL-ELE-00-022 69 bp View
DQ469639.1 nt Transformation vector pYW300, compl... 15368 bp Transformation vector pYW300 QL-ELE-00-026 60 bp View
DQ469639.1 nt Transformation vector pYW300, compl... 15368 bp Transformation vector pYW300 QT-ELE-00-001 79 bp View
DQ469639.1 nt Transformation vector pYW300, compl... 15368 bp Transformation vector pYW300 QT-ELE-00-004 82 bp View
DQ469640.1 nt Transformation vector pYW301, compl... 15470 bp Transformation vector pYW301 QL-ELE-00-022 69 bp View
DQ469640.1 nt Transformation vector pYW301, compl... 15470 bp Transformation vector pYW301 QL-ELE-00-026 60 bp View
DQ469640.1 nt Transformation vector pYW301, compl... 15470 bp Transformation vector pYW301 QT-ELE-00-001 79 bp View
DQ469640.1 nt Transformation vector pYW301, compl... 15470 bp Transformation vector pYW301 QT-ELE-00-004 82 bp View
DQ469641.1 nt Transformation vector pYW310, compl... 15380 bp Transformation vector pYW310 QL-ELE-00-022 69 bp View
DQ469641.1 nt Transformation vector pYW310, compl... 15380 bp Transformation vector pYW310 QL-ELE-00-026 60 bp View
DQ469641.1 nt Transformation vector pYW310, compl... 15380 bp Transformation vector pYW310 QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.