European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 2925 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QL-ELE-00-026 60 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QT-ELE-00-001 79 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QT-ELE-00-004 82 bp View
KY420083.1 nt Plant TransGene Stacking II system ... 17366 bp Plant TransGene Stacking II system binary acceptor vector pYLTAC380B QT-ELE-00-004 82 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QL-ELE-00-022 69 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QL-ELE-00-026 60 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QT-ELE-00-001 79 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QT-ELE-00-004 82 bp View
KY420087.1 nt Plant TransGene Stacking II system ... 7246 bp Plant TransGene Stacking II system marker-free donor vector pYLMF-B QT-ELE-00-004 82 bp View
KY489665.1 nt Cloning vector pUbiCas9-Red, comple... 18587 bp Cloning vector pUbiCas9-Red QL-ELE-00-022 69 bp View
KY489665.1 nt Cloning vector pUbiCas9-Red, comple... 18587 bp Cloning vector pUbiCas9-Red QL-ELE-00-026 60 bp View
KY489665.1 nt Cloning vector pUbiCas9-Red, comple... 18587 bp Cloning vector pUbiCas9-Red QT-ELE-00-001 83 bp View
KY489665.1 nt Cloning vector pUbiCas9-Red, comple... 18587 bp Cloning vector pUbiCas9-Red QT-ELE-00-004 82 bp View
KY489666.1 nt Cloning vector pEciCas9-Red, comple... 19241 bp Cloning vector pEciCas9-Red QL-ELE-00-022 69 bp View
KY489666.1 nt Cloning vector pEciCas9-Red, comple... 19241 bp Cloning vector pEciCas9-Red QL-ELE-00-026 60 bp View
KY489666.1 nt Cloning vector pEciCas9-Red, comple... 19241 bp Cloning vector pEciCas9-Red QT-ELE-00-001 83 bp View
KY489666.1 nt Cloning vector pEciCas9-Red, comple... 19241 bp Cloning vector pEciCas9-Red QT-ELE-00-004 82 bp View
LC189561.1 nt Cloning vector p35S-Cas9 DNA, compl... 16628 bp Cloning vector p35S-Cas9 QL-ELE-00-022 69 bp View
LC189561.1 nt Cloning vector p35S-Cas9 DNA, compl... 16628 bp Cloning vector p35S-Cas9 QL-ELE-00-026 60 bp View
LC189561.1 nt Cloning vector p35S-Cas9 DNA, compl... 16628 bp Cloning vector p35S-Cas9 QT-ELE-00-001 79 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.