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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 5891 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AY560326.1 nt Cloning vector pC1300intB-35SnosBK,... 9946 bp Cloning vector pC1300intB-35SnosBK QL-ELE-00-017 75 bp View
AY592954.1 nt Glycine max transgenic chloroplast ... 707 bp Glycine max QL-ELE-00-017 75 bp View
AY592954.1 emblreltgn Glycine max transgenic chloroplast ... 707 bp Glycine max QL-ELE-00-017 75 bp View
AY596948.1 emblreltgn Glycine max transgenic cultivar Rou... 494 bp Glycine max QL-ELE-00-017 75 bp View
AY596948.1 nt Glycine max transgenic cultivar Rou... 494 bp Glycine max QL-ELE-00-017 75 bp View
AY615305.1 nt Synthetic construct CaMV35S promote... 908 bp synthetic construct QL-ELE-00-017 75 bp View
AY737283.1 nt C-terminal TAP T-DNA vector pYL436,... 12607 bp C-terminal TAP T-DNA vector pYL436 QL-ELE-00-017 75 bp View
AY737283.1 nt C-terminal TAP T-DNA vector pYL436,... 12607 bp C-terminal TAP T-DNA vector pYL436 QL-ELE-00-017 75 bp View
AY739897.1 nt Cloning vector pRGK335, complete se... 11051 bp Cloning vector pRGK335 QL-ELE-00-017 75 bp View
AY739898.1 nt Cloning vector pRGK336, complete se... 11700 bp Cloning vector pRGK336 QL-ELE-00-017 75 bp View
AY739898.1 nt Cloning vector pRGK336, complete se... 11700 bp Cloning vector pRGK336 QL-ELE-00-017 75 bp View
AY781296.1 nt Expression vector pBI121_pro T-DNA ... 8196 bp Expression vector pBI121_pro QL-ELE-00-017 75 bp View
AY788908.1 nt N-terminal TAPa T-DNA vector pN-TAP... 12537 bp N-terminal TAPa T-DNA vector pN-TAPa QL-ELE-00-017 75 bp View
AY788908.1 nt N-terminal TAPa T-DNA vector pN-TAP... 12537 bp N-terminal TAPa T-DNA vector pN-TAPa QL-ELE-00-017 75 bp View
AY804024.1 nt Binary vector pGA643, complete sequ... 11601 bp Binary vector pGA643 QL-ELE-00-017 75 bp View
AY818363.1 nt Cloning vector pSAT1-EGFP-C1, compl... 4553 bp Cloning vector pSAT1-EGFP-C1 QL-ELE-00-017 75 bp View
AY818364.1 nt Hygromycin resistance plant express... 4834 bp Hygromycin resistance plant expression vector pSAT1-hpt QL-ELE-00-017 75 bp View
AY818365.1 nt Cloning vector pSAT2-EGFP-C1, compl... 4560 bp Cloning vector pSAT2-EGFP-C1 QL-ELE-00-017 75 bp View
AY818366.1 nt Cloning vector pSAT3-EGFP-C1, compl... 4567 bp Cloning vector pSAT3-EGFP-C1 QL-ELE-00-017 75 bp View
AY818367.1 nt Cloning vector pSAT4-EGFP-C1, compl... 4573 bp Cloning vector pSAT4-EGFP-C1 QL-ELE-00-017 75 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.