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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 5891 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AF354045.1 nt Binary vector pCAMBIA-1305.1, compl... 11846 bp Binary vector pCAMBIA-1305.1 QL-ELE-00-017 75 bp View
AF354046.1 nt Binary vector pCAMBIA-1305.2, compl... 11921 bp Binary vector pCAMBIA-1305.2 QL-ELE-00-017 75 bp View
AF404854.1 nt Binary vector pJawohl3-RNAi, comple... 5597 bp Binary vector pJawohl3-RNAi QL-ELE-00-017 75 bp View
AF406991.1 nt Tobacco rattle virus RNA2-based VIG... 9663 bp Tobacco rattle virus RNA2-based VIGS vector pTRV2 QL-ELE-00-017 75 bp View
AF408413.1 nt Binary vector pJawohl8-RNAi, comple... 9019 bp Binary vector pJawohl8-RNAi QL-ELE-00-017 75 bp View
AF434746.1 nt Zea mays variety sample K1 genomic ... 199 bp Zea mays QL-ELE-00-017 75 bp View
AF434748.1 nt Zea mays landrace sample B2 genomic... 199 bp Zea mays QL-ELE-00-017 75 bp View
AF434749.1 nt Zea mays landrace sample A3 genomic... 174 bp Zea mays QL-ELE-00-017 75 bp View
AF434750.1 nt Zea mays landrace sample A2 genomic... 199 bp Zea mays QL-ELE-00-017 75 bp View
AF458478.1 nt Binary vector pLH9000, complete seq... 9154 bp Binary vector pLH9000 QL-ELE-00-017 75 bp View
AF458479.1 nt Binary vector pLH9500, complete seq... 9146 bp Binary vector pLH9500 QL-ELE-00-017 75 bp View
AF485783.1 nt Binary vector pBI121, complete sequ... 14758 bp Binary vector pBI121 QL-ELE-00-017 75 bp View
AF502128.1 nt Transient expression vector pBI221,... 5667 bp Transient expression vector pBI221 QL-ELE-00-017 75 bp View
AJ007625.1 nt Cauliflower mosaic virus 35S promot... 485 bp Cauliflower mosaic virus QL-ELE-00-017 115 bp View
AJ251014.1 nt Transformation binary vector pBAR-3... 3236 bp Transformation binary vector pBAR-35S QL-ELE-00-017 75 bp View
AJ298137.1 nt Arabidopsis thaliana eIF-4A1 gene f... 11509 bp Arabidopsis thaliana QL-ELE-00-017 75 bp View
AJ315956.1 nt Binary Cloning vector pAC161 10828 bp Binary cloning vector pAC161 QL-ELE-00-017 75 bp View
AJ414109.1 nt Binary vector pGV4126 DNA, region b... 5341 bp Binary vector pGV4126 QL-ELE-00-017 75 bp View
AJ414110.1 nt Binary vector pGV4128 DNA, region b... 5439 bp Binary vector pGV4128 QL-ELE-00-017 75 bp View
AJ414111.1 nt Binary vector pGV4223 DNA, region b... 5582 bp Binary vector pGV4223 QL-ELE-00-017 75 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.