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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 5891 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
AB830545.1 nt Gateway vector pGWnR DNA, complete ... 6508 bp Gateway vector pGWnR QL-ELE-00-017 75 bp View
AB830546.1 nt Gateway vector pB4cCGGW DNA, comple... 11904 bp Gateway vector pB4cCGGW QL-ELE-00-017 75 bp View
AB830547.1 nt Gateway vector pB4cRGW DNA, complet... 11948 bp Gateway vector pB4cRGW QL-ELE-00-017 75 bp View
AB830548.1 nt Gateway vector pB4cYGW DNA, complet... 11904 bp Gateway vector pB4cYGW QL-ELE-00-017 75 bp View
AB830549.1 nt Gateway vector pB4nCGW DNA, complet... 12228 bp Gateway vector pB4nCGW QL-ELE-00-017 75 bp View
AB830550.1 nt Gateway vector pB4nGGW DNA, complet... 12228 bp Gateway vector pB4nGGW QL-ELE-00-017 75 bp View
AB830551.1 nt Gateway vector pB4nRGW DNA, complet... 12201 bp Gateway vector pB4nRGW QL-ELE-00-017 75 bp View
AB830552.1 nt Gateway vector pB4nYGW DNA, complet... 12228 bp Gateway vector pB4nYGW QL-ELE-00-017 75 bp View
AB830553.1 nt Gateway vector pB4GWcCG DNA, comple... 11889 bp Gateway vector pB4GWcCG QL-ELE-00-017 75 bp View
AB830554.1 nt Gateway vector pB4GWcR DNA, complet... 11931 bp Gateway vector pB4GWcR QL-ELE-00-017 75 bp View
AB830555.1 nt Gateway vector pB4GWcY DNA, complet... 11889 bp Gateway vector pB4GWcY QL-ELE-00-017 75 bp View
AB830556.1 nt Gateway vector pB4GWnC DNA, complet... 12213 bp Gateway vector pB4GWnC QL-ELE-00-017 75 bp View
AB830557.1 nt Gateway vector pB4GWnG DNA, complet... 12213 bp Gateway vector pB4GWnG QL-ELE-00-017 75 bp View
AB830558.1 nt Gateway vector pB4GWnR DNA, complet... 12186 bp Gateway vector pB4GWnR QL-ELE-00-017 75 bp View
AB830559.1 nt Gateway vector pB4GWnY DNA, complet... 12213 bp Gateway vector pB4GWnY QL-ELE-00-017 75 bp View
AB830560.1 nt Gateway vector pB5cCGGW DNA, comple... 12222 bp Gateway vector pB5cCGGW QL-ELE-00-017 75 bp View
AB830561.1 nt Gateway vector pB5cRGW DNA, complet... 12266 bp Gateway vector pB5cRGW QL-ELE-00-017 75 bp View
AB830562.1 nt Gateway vector pB5cYGW DNA, complet... 12222 bp Gateway vector pB5cYGW QL-ELE-00-017 75 bp View
AB830563.1 nt Gateway vector pB5GWcCG DNA, comple... 12207 bp Gateway vector pB5GWcCG QL-ELE-00-017 75 bp View
AB830564.1 nt Gateway vector pB5GWcR DNA, complet... 12249 bp Gateway vector pB5GWcR QL-ELE-00-017 75 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.