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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 174 amplicons

Restrict to taxon(s):


Record ID Database Record description Record length Taxon Method Amplicon size Match details
I75254.1 emblrelpat Sequence 3 from patent US 5689052. 3531 bp unidentified QL-ELE-00-016 74 bp View
I75356.1 emblrelpat Sequence 105 from patent US 5689052. 3484 bp unidentified QL-ELE-00-016 74 bp View
JD009657.1 emblrelpat Sequence 8 from Patent WO2014170345. 6426 bp synthetic construct QL-ELE-00-016 74 bp View
JD009658.1 emblrelpat Sequence 9 from Patent WO2014170345. 14416 bp synthetic construct QL-ELE-00-016 74 bp View
JD011419.1 emblrelpat Sequence 8 from Patent WO2014170327. 6426 bp synthetic construct QL-ELE-00-016 74 bp View
JD011420.1 emblrelpat Sequence 9 from Patent WO2014170327. 14416 bp synthetic construct QL-ELE-00-016 74 bp View
KC782833.1 nt Synthetic construct Cry1Ac::ASAL fu... 1464 bp synthetic construct QL-ELE-00-016 74 bp View
KF630361.1 nt Synthetic construct Cry1AC gene, co... 1848 bp synthetic construct QL-ELE-00-016 74 bp View
KH280597.1 emblrelpat Sequence 11 from patent US 9462805. 1848 bp unidentified QL-ELE-00-016 74 bp View
KH282105.1 emblrelpat Sequence 11 from patent US 9464117. 1848 bp unidentified QL-ELE-00-016 74 bp View
KH407139.1 emblrelpat Sequence 36 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407140.1 emblrelpat Sequence 37 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407141.1 emblrelpat Sequence 38 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407142.1 emblrelpat Sequence 39 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407143.1 emblrelpat Sequence 40 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407144.1 emblrelpat Sequence 41 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407152.1 emblrelpat Sequence 49 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407154.1 emblrelpat Sequence 51 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407156.1 emblrelpat Sequence 53 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View
KH407157.1 emblrelpat Sequence 54 from patent US 9512187. 1857 bp unidentified QL-ELE-00-016 74 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.