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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MW026679.1 nt Plant expression vector pZG71, comp... 13558 bp Plant expression vector pZG71 QL-ELE-00-012 82 bp View
MW026679.1 nt Plant expression vector pZG71, comp... 13558 bp Plant expression vector pZG71 QL-ELE-00-012 82 bp View
MW026679.1 nt Plant expression vector pZG71, comp... 13558 bp Plant expression vector pZG71 QL-ELE-00-012 82 bp View
MW026680.1 nt Plant expression vector pZG165, com... 12906 bp Plant expression vector pZG165 QL-ELE-00-012 82 bp View
MW026680.1 nt Plant expression vector pZG165, com... 12906 bp Plant expression vector pZG165 QL-ELE-00-012 82 bp View
MW026680.1 nt Plant expression vector pZG165, com... 12906 bp Plant expression vector pZG165 QL-ELE-00-012 82 bp View
MW281334.1 nt Cloning vector pLX-AS, complete seq... 4524 bp Cloning vector pLX-AS QL-ELE-00-012 82 bp View
MW281335.1 nt Cloning vector pLX-TuRV, complete s... 8306 bp Cloning vector pLX-TuRV QL-ELE-00-012 82 bp View
MW557526.1 nt Cloning vector pGWB-nLUC, complete ... 13430 bp Cloning vector pGWB-nLUC QL-ELE-00-012 82 bp View
MW557526.1 nt Cloning vector pGWB-nLUC, complete ... 13430 bp Cloning vector pGWB-nLUC QL-ELE-00-012 82 bp View
MW557526.1 nt Cloning vector pGWB-nLUC, complete ... 13430 bp Cloning vector pGWB-nLUC QL-ELE-00-012 82 bp View
MW557527.1 nt Cloning vector pGWB-cLUC, complete ... 12656 bp Cloning vector pGWB-cLUC QL-ELE-00-012 82 bp View
MW557527.1 nt Cloning vector pGWB-cLUC, complete ... 12656 bp Cloning vector pGWB-cLUC QL-ELE-00-012 82 bp View
MW557527.1 nt Cloning vector pGWB-cLUC, complete ... 12656 bp Cloning vector pGWB-cLUC QL-ELE-00-012 82 bp View
MW653811.1 nt T-DNA vector pBDL11, complete sequence. 19718 bp T-DNA vector pBDL11 QL-ELE-00-012 82 bp View
MW653811.1 nt T-DNA vector pBDL11, complete sequence. 19718 bp T-DNA vector pBDL11 QL-ELE-00-012 82 bp View
MW653811.1 nt T-DNA vector pBDL11, complete sequence. 19718 bp T-DNA vector pBDL11 QL-ELE-00-012 82 bp View
MW653812.1 nt T-DNA vector pBDL23, complete sequence. 22456 bp T-DNA vector pBDL23 QL-ELE-00-012 82 bp View
MW653812.1 nt T-DNA vector pBDL23, complete sequence. 22456 bp T-DNA vector pBDL23 QL-ELE-00-012 82 bp View
MW653812.1 nt T-DNA vector pBDL23, complete sequence. 22456 bp T-DNA vector pBDL23 QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.