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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MT362436.1 nt Binary vector pGC13.0117_TcBBM, com... 20124 bp Binary vector pGC13.0117_TcBBM QL-ELE-00-012 82 bp View
MT362436.1 nt Binary vector pGC13.0117_TcBBM, com... 20124 bp Binary vector pGC13.0117_TcBBM QL-ELE-00-012 82 bp View
MT362436.1 nt Binary vector pGC13.0117_TcBBM, com... 20124 bp Binary vector pGC13.0117_TcBBM QL-ELE-00-012 82 bp View
MT362436.1 nt Binary vector pGC13.0117_TcBBM, com... 20124 bp Binary vector pGC13.0117_TcBBM QL-ELE-00-012 82 bp View
MT611510.1 nt Cauliflower mosaic virus promoter r... 576 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
MT647188.1 nt Vector pUC-d35S-TLE-GFP, complete s... 4550 bp Vector pUC-d35S-TLE-GFP QL-ELE-00-012 82 bp View
MT647188.1 nt Vector pUC-d35S-TLE-GFP, complete s... 4550 bp Vector pUC-d35S-TLE-GFP QL-ELE-00-012 82 bp View
MT670352.1 nt Cloning vector pSH179, complete seq... 9436 bp Cloning vector pSH179 QL-ELE-00-012 82 bp View
MT670352.1 nt Cloning vector pSH179, complete seq... 9436 bp Cloning vector pSH179 QL-ELE-00-012 82 bp View
MT891153.1 nt Cloning vector pSN.5_mNeon, complet... 9272 bp Cloning vector pSN.5_mNeon QL-ELE-00-012 82 bp View
MT891154.1 nt Cloning vector pSN.5_mPapaya1, comp... 9326 bp Cloning vector pSN.5_mPapaya1 QL-ELE-00-012 82 bp View
MT891155.1 nt Cloning vector pSN.5_mTagBFP2, comp... 9290 bp Cloning vector pSN.5_mTagBFP2 QL-ELE-00-012 82 bp View
MT891156.1 nt Cloning vector pSN.5_mTFP1, complet... 9326 bp Cloning vector pSN.5_mTFP1 QL-ELE-00-012 82 bp View
MT891157.1 nt Cloning vector pSN.5_TagRFP-T, comp... 9283 bp Cloning vector pSN.5_TagRFP-T QL-ELE-00-012 82 bp View
MV059028.1 emblrelpat Sequence 7 from patent US 10604762. 5804 bp unidentified QL-ELE-00-012 82 bp View
MV059033.1 emblrelpat Sequence 12 from patent US 10604762. 5840 bp unidentified QL-ELE-00-012 82 bp View
MV059034.1 emblrelpat Sequence 13 from patent US 10604762. 6897 bp unidentified QL-ELE-00-012 82 bp View
MV059058.1 emblrelpat Sequence 5 from patent US 10604765. 2014 bp unidentified QL-ELE-00-012 82 bp View
MV059058.1 emblrelpat Sequence 5 from patent US 10604765. 2014 bp unidentified QL-ELE-00-012 82 bp View
MV059059.1 emblrelpat Sequence 6 from patent US 10604765. 7484 bp unidentified QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.