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European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN508832.1 nt Binary vector pRATIO1212-SMAX1D2, c... 12814 bp Binary vector pRATIO1212-SMAX1D2 QL-ELE-00-012 82 bp View
MN508833.1 nt Binary vector pRATIO3212-SMAX1, com... 14548 bp Binary vector pRATIO3212-SMAX1 QL-ELE-00-012 82 bp View
MN508834.1 nt Binary vector pRATIO3212-SMXL7, com... 14584 bp Binary vector pRATIO3212-SMXL7 QL-ELE-00-012 82 bp View
MN519522.1 nt Cloning vector OsPHO1pNFG, complete... 20300 bp Cloning vector OsPHO1pNFG QL-ELE-00-012 82 bp View
MN519522.1 nt Cloning vector OsPHO1pNFG, complete... 20300 bp Cloning vector OsPHO1pNFG QL-ELE-00-012 82 bp View
MN585216.1 nt Cloning vector pLGS1, complete sequ... 32926 bp Cloning vector pLGS1 QL-ELE-00-012 82 bp View
MN635704.1 nt Cloning vector pSB11-CRSPR-Cas9-HPT... 14941 bp Cloning vector pSB11-CRSPR-Cas9-HPT QL-ELE-00-012 82 bp View
MN635704.1 nt Cloning vector pSB11-CRSPR-Cas9-HPT... 14941 bp Cloning vector pSB11-CRSPR-Cas9-HPT QL-ELE-00-012 81 bp View
MN635704.1 nt Cloning vector pSB11-CRSPR-Cas9-HPT... 14941 bp Cloning vector pSB11-CRSPR-Cas9-HPT QL-ELE-00-012 82 bp View
MN635704.1 nt Cloning vector pSB11-CRSPR-Cas9-HPT... 14941 bp Cloning vector pSB11-CRSPR-Cas9-HPT QL-ELE-00-012 82 bp View
MN728541.1 nt Cloning vector 35S-GFP, complete se... 4696 bp Cloning vector 35S-GFP QL-ELE-00-012 82 bp View
MN728544.1 nt Cloning vector pRTL, complete sequence. 4783 bp Cloning vector pRTL QL-ELE-00-012 82 bp View
MN728549.1 nt Cloning vector pSMXL7-WT-LUC, compl... 6791 bp Cloning vector pSMXL7-WT-LUC QL-ELE-00-012 82 bp View
MN728550.1 nt Cloning vector pSMXL7-mu3-LUC, comp... 6791 bp Cloning vector pSMXL7-mu3-LUC QL-ELE-00-012 82 bp View
MN728551.1 nt Cloning vector pSMXL6-SMXL6-HA, com... 14241 bp Cloning vector pSMXL6-SMXL6-HA QL-ELE-00-012 82 bp View
MN728551.1 nt Cloning vector pSMXL6-SMXL6-HA, com... 14241 bp Cloning vector pSMXL6-SMXL6-HA QL-ELE-00-012 82 bp View
MN728555.1 nt Cloning vector PAPs-CRISPR, complet... 15207 bp Cloning vector PAPs-CRISPR QL-ELE-00-012 82 bp View
MN728555.1 nt Cloning vector PAPs-CRISPR, complet... 15207 bp Cloning vector PAPs-CRISPR QL-ELE-00-012 82 bp View
MN728556.1 nt Cloning vector TCP1-CRISPR, complet... 16132 bp Cloning vector TCP1-CRISPR QL-ELE-00-012 82 bp View
MN728556.1 nt Cloning vector TCP1-CRISPR, complet... 16132 bp Cloning vector TCP1-CRISPR QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.