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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MN020371.1 nt Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-ELE-00-012 82 bp View
MN020371.1 nt Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-ELE-00-012 82 bp View
MN020371.1 emblreltgn Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-ELE-00-012 82 bp View
MN020371.1 emblreltgn Triticum aestivum transgenic MON712... 7729 bp Triticum aestivum QL-ELE-00-012 82 bp View
MN043929.1 nt Cloning vector pFLP19, complete seq... 5256 bp Cloning vector pFLP19 QL-ELE-00-012 82 bp View
MN043929.1 nt Cloning vector pFLP19, complete seq... 5256 bp Cloning vector pFLP19 QL-ELE-00-012 82 bp View
MN055604.1 nt Plant binary expression vector pNC-... 5506 bp Plant binary expression vector pNC-CFP-C QL-ELE-00-012 82 bp View
MN055605.1 nt Plant binary expression vector pNC-... 5507 bp Plant binary expression vector pNC-CFP-N QL-ELE-00-012 82 bp View
MN055606.1 nt Plant binary expression vector pNC-... 5497 bp Plant binary expression vector pNC-mCherry-C QL-ELE-00-012 82 bp View
MN055607.1 nt Plant binary expression vector pNC-... 5498 bp Plant binary expression vector pNC-mCherry-N QL-ELE-00-012 82 bp View
MN055608.1 nt Plant binary expression vector pNC-... 5464 bp Plant binary expression vector pNC-RFP-C QL-ELE-00-012 82 bp View
MN055609.1 nt Plant binary expression vector pNC-... 5465 bp Plant binary expression vector pNC-RFP-N QL-ELE-00-012 82 bp View
MN164628.2 nt Binary vector for potato transforma... 26019 bp Binary vector pCIP99 QL-ELE-00-012 82 bp View
MN164628.2 nt Binary vector for potato transforma... 26019 bp Binary vector pCIP99 QL-ELE-00-012 82 bp View
MN187555.1 nt Cloning vector pEAQ-EGgw, complete ... 12386 bp Cloning vector pEAQ-EGgw QL-ELE-00-012 82 bp View
MN187555.1 nt Cloning vector pEAQ-EGgw, complete ... 12386 bp Cloning vector pEAQ-EGgw QL-ELE-00-012 82 bp View
MN187556.1 nt Cloning vector pEAQ-TRgw, complete ... 12362 bp Cloning vector pEAQ-TRgw QL-ELE-00-012 82 bp View
MN187556.1 nt Cloning vector pEAQ-TRgw, complete ... 12362 bp Cloning vector pEAQ-TRgw QL-ELE-00-012 82 bp View
MN187557.1 nt Cloning vector pEAQ-gwEG, complete ... 12387 bp Cloning vector pEAQ-gwEG QL-ELE-00-012 82 bp View
MN187557.1 nt Cloning vector pEAQ-gwEG, complete ... 12387 bp Cloning vector pEAQ-gwEG QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.