European Commission logo
Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MG733987.1 nt Binary vector pCNM3. 9409 bp Binary vector pCNM3 QL-ELE-00-012 82 bp View
MG733987.1 nt Binary vector pCNM3. 9409 bp Binary vector pCNM3 QL-ELE-00-012 82 bp View
MG760355.1 nt Cloning vector pIPGT-Nuc, complete ... 16557 bp Cloning vector pIPGT-Nuc QL-ELE-00-012 82 bp View
MG760356.1 nt Cloning vector pVIR-Nuc, complete s... 18374 bp Cloning vector pVIR-Nuc QL-ELE-00-012 82 bp View
MG760357.1 nt Cloning vector pVIR-Nick, complete ... 19084 bp Cloning vector pVIR-Nick QL-ELE-00-012 82 bp View
MG760357.1 nt Cloning vector pVIR-Nick, complete ... 19084 bp Cloning vector pVIR-Nick QL-ELE-00-012 82 bp View
MG881768.1 nt Transformation vector pBHRF-108, co... 7024 bp Transformation vector pBHRF-108 QL-ELE-00-012 82 bp View
MG881769.1 nt Transformation vector pBHRF-108-Ype... 10779 bp Transformation vector pBHRF-108-Ypet QL-ELE-00-012 82 bp View
MG913351.1 nt Cauliflower mosaic virus clone PSS ... 333 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
MH200603.1 nt Binary vector pLX-WMoV, complete se... 10508 bp Binary vector pLX-WMoV QL-ELE-00-012 82 bp View
MH200605.1 nt Binary vector pLX-TCTV, complete se... 7625 bp Binary vector pLX-TCTV QL-ELE-00-012 82 bp View
MH200606.1 nt Binary vector pLX-CaMV, complete se... 12857 bp Binary vector pLX-CaMV QL-ELE-00-012 82 bp View
MH200606.1 nt Binary vector pLX-CaMV, complete se... 12857 bp Binary vector pLX-CaMV QL-ELE-00-012 82 bp View
MH625695.1 nt VIGS vector pTRV-RNA1, complete seq... 14395 bp VIGS vector pTRV-RNA1 QL-ELE-00-012 82 bp View
MH625696.1 nt VIGS vector pTRV-RNA2, complete seq... 8928 bp VIGS vector pTRV-RNA2 QL-ELE-00-012 82 bp View
MH801876.1 nt Synthetic construct lincosamide nuc... 1522 bp synthetic construct QL-ELE-00-012 82 bp View
MH801876.1 nt Synthetic construct lincosamide nuc... 1522 bp synthetic construct QL-ELE-00-012 82 bp View
MI001126.1 emblrelpat Sequence 1 from patent US 9725399. 21527 bp unidentified QL-ELE-00-012 82 bp View
MI001127.1 emblrelpat Sequence 2 from patent US 9725399. 23512 bp unidentified QL-ELE-00-012 82 bp View
MI019114.1 emblrelpat Sequence 5 from patent US 9725772. 11978 bp unidentified QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.