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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MB014658.1 emblrelpat JP 2018504119-A/31: ROTAVIRUS-LIKE ... 4068 bp synthetic construct QL-ELE-00-012 82 bp View
MB014662.1 emblrelpat JP 2018504119-A/35: ROTAVIRUS-LIKE ... 2634 bp synthetic construct QL-ELE-00-012 82 bp View
MB014662.1 emblrelpat JP 2018504119-A/35: ROTAVIRUS-LIKE ... 2634 bp synthetic construct QL-ELE-00-012 82 bp View
MB014666.1 emblrelpat JP 2018504119-A/39: ROTAVIRUS-LIKE ... 2268 bp synthetic construct QL-ELE-00-012 82 bp View
MB014666.1 emblrelpat JP 2018504119-A/39: ROTAVIRUS-LIKE ... 2268 bp synthetic construct QL-ELE-00-012 82 bp View
MB014668.1 emblrelpat JP 2018504119-A/41: ROTAVIRUS-LIKE ... 4540 bp synthetic construct QL-ELE-00-012 82 bp View
MB014668.1 emblrelpat JP 2018504119-A/41: ROTAVIRUS-LIKE ... 4540 bp synthetic construct QL-ELE-00-012 82 bp View
MB014669.1 emblrelpat JP 2018504119-A/42: ROTAVIRUS-LIKE ... 4056 bp synthetic construct QL-ELE-00-012 82 bp View
MB014669.1 emblrelpat JP 2018504119-A/42: ROTAVIRUS-LIKE ... 4056 bp synthetic construct QL-ELE-00-012 82 bp View
MB014671.1 emblrelpat JP 2018504119-A/44: ROTAVIRUS-LIKE ... 2577 bp synthetic construct QL-ELE-00-012 82 bp View
MB014671.1 emblrelpat JP 2018504119-A/44: ROTAVIRUS-LIKE ... 2577 bp synthetic construct QL-ELE-00-012 82 bp View
MB014673.1 emblrelpat JP 2018504119-A/46: ROTAVIRUS-LIKE ... 3711 bp synthetic construct QL-ELE-00-012 82 bp View
MB014673.1 emblrelpat JP 2018504119-A/46: ROTAVIRUS-LIKE ... 3711 bp synthetic construct QL-ELE-00-012 82 bp View
MB014675.1 emblrelpat JP 2018504119-A/48: ROTAVIRUS-LIKE ... 2277 bp synthetic construct QL-ELE-00-012 82 bp View
MB014675.1 emblrelpat JP 2018504119-A/48: ROTAVIRUS-LIKE ... 2277 bp synthetic construct QL-ELE-00-012 82 bp View
MB014690.1 emblrelpat JP 2018502590-A/2: A method for pre... 5713 bp synthetic construct QL-ELE-00-012 82 bp View
MB014690.1 emblrelpat JP 2018502590-A/2: A method for pre... 5713 bp synthetic construct QL-ELE-00-012 82 bp View
MB017800.1 emblrelpat JP 2018506305-A/4: HERBICIDE RESIST... 530 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
MB124407.1 emblrelpat JP 2019110860-A/6: Production metho... 749 bp synthetic construct QL-ELE-00-012 82 bp View
MB124407.1 emblrelpat JP 2019110860-A/6: Production metho... 749 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.