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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MA852688.1 emblrelpat WO 2019026948-A/1: Cotton coloring. 13772 bp synthetic construct QL-ELE-00-012 82 bp View
MA852689.1 emblrelpat WO 2019026948-A/2: Cotton coloring. 15470 bp synthetic construct QL-ELE-00-012 82 bp View
MA852690.1 emblrelpat WO 2019026948-A/3: Cotton coloring. 16845 bp synthetic construct QL-ELE-00-012 82 bp View
MA854476.1 emblrelpat WO 2019039417-A/22: Target sequence... 820 bp synthetic construct QL-ELE-00-012 82 bp View
MA854476.1 emblrelpat WO 2019039417-A/22: Target sequence... 820 bp synthetic construct QL-ELE-00-012 82 bp View
MA868124.1 emblrelpat JP 2018537123-A/72: METHODS AND COM... 20570 bp synthetic construct QL-ELE-00-012 82 bp View
MA868125.1 emblrelpat JP 2018537123-A/73: METHODS AND COM... 20572 bp synthetic construct QL-ELE-00-012 82 bp View
MA889218.1 emblrelpat JP 2017205109-A/2: A method of high... 835 bp synthetic construct QL-ELE-00-012 82 bp View
MB002271.1 emblrelpat JP 2017535296-A/18: NUCLEIC ACID CO... 14400 bp synthetic construct QL-ELE-00-012 82 bp View
MB002306.1 emblrelpat JP 2017535296-A/53: NUCLEIC ACID CO... 5414 bp synthetic construct QL-ELE-00-012 82 bp View
MB002306.1 emblrelpat JP 2017535296-A/53: NUCLEIC ACID CO... 5414 bp synthetic construct QL-ELE-00-012 82 bp View
MB004957.1 emblrelpat JP 2017536134-A/13: Transgenic plan... 1027 bp synthetic construct QL-ELE-00-012 82 bp View
MB004961.1 emblrelpat JP 2017536134-A/17: Transgenic plan... 11159 bp synthetic construct QL-ELE-00-012 82 bp View
MB014649.1 emblrelpat JP 2018504119-A/22: ROTAVIRUS-LIKE ... 4875 bp synthetic construct QL-ELE-00-012 82 bp View
MB014649.1 emblrelpat JP 2018504119-A/22: ROTAVIRUS-LIKE ... 4875 bp synthetic construct QL-ELE-00-012 82 bp View
MB014650.1 emblrelpat JP 2018504119-A/23: ROTAVIRUS-LIKE ... 4413 bp synthetic construct QL-ELE-00-012 82 bp View
MB014650.1 emblrelpat JP 2018504119-A/23: ROTAVIRUS-LIKE ... 4413 bp synthetic construct QL-ELE-00-012 82 bp View
MB014654.1 emblrelpat JP 2018504119-A/27: ROTAVIRUS-LIKE ... 2934 bp synthetic construct QL-ELE-00-012 82 bp View
MB014654.1 emblrelpat JP 2018504119-A/27: ROTAVIRUS-LIKE ... 2934 bp synthetic construct QL-ELE-00-012 82 bp View
MB014658.1 emblrelpat JP 2018504119-A/31: ROTAVIRUS-LIKE ... 4068 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.