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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MA798747.1 emblrelpat JP 2018171058-A/26: Rotavirus-like ... 2934 bp synthetic construct QL-ELE-00-012 82 bp View
MA798750.1 emblrelpat JP 2018171058-A/29: Rotavirus-like ... 4068 bp synthetic construct QL-ELE-00-012 82 bp View
MA798750.1 emblrelpat JP 2018171058-A/29: Rotavirus-like ... 4068 bp synthetic construct QL-ELE-00-012 82 bp View
MA798754.1 emblrelpat JP 2018171058-A/33: Rotavirus-like ... 4897 bp synthetic construct QL-ELE-00-012 82 bp View
MA798754.1 emblrelpat JP 2018171058-A/33: Rotavirus-like ... 4897 bp synthetic construct QL-ELE-00-012 82 bp View
MA798755.1 emblrelpat JP 2018171058-A/34: Rotavirus-like ... 2643 bp synthetic construct QL-ELE-00-012 82 bp View
MA798755.1 emblrelpat JP 2018171058-A/34: Rotavirus-like ... 2643 bp synthetic construct QL-ELE-00-012 82 bp View
MA798756.1 emblrelpat JP 2018171058-A/35: Rotavirus-like ... 4068 bp synthetic construct QL-ELE-00-012 82 bp View
MA798756.1 emblrelpat JP 2018171058-A/35: Rotavirus-like ... 4068 bp synthetic construct QL-ELE-00-012 82 bp View
MA798770.1 emblrelpat JP 2018171058-A/49: Rotavirus-like ... 2634 bp synthetic construct QL-ELE-00-012 82 bp View
MA798770.1 emblrelpat JP 2018171058-A/49: Rotavirus-like ... 2634 bp synthetic construct QL-ELE-00-012 82 bp View
MA816593.1 emblrelpat WO 2018220929-A/28: EXPRESSION SYST... 15510 bp synthetic construct QL-ELE-00-012 82 bp View
MA816593.1 emblrelpat WO 2018220929-A/28: EXPRESSION SYST... 15510 bp synthetic construct QL-ELE-00-012 82 bp View
MA846703.1 emblrelpat JP 2018537080-A/32: METHODS AND COM... 22782 bp synthetic construct QL-ELE-00-012 82 bp View
MA846724.1 emblrelpat JP 2018537080-A/53: METHODS AND COM... 4857 bp synthetic construct QL-ELE-00-012 82 bp View
MA846728.1 emblrelpat JP 2018537080-A/57: METHODS AND COM... 22782 bp synthetic construct QL-ELE-00-012 82 bp View
MA846801.1 emblrelpat JP 2018536400-A/2: DRIMENOL SYNTHAS... 543 bp synthetic construct QL-ELE-00-012 82 bp View
MA851161.1 emblrelpat JP 2019024497-A/1: Cotton coloring. 13772 bp synthetic construct QL-ELE-00-012 82 bp View
MA851162.1 emblrelpat JP 2019024497-A/2: Cotton coloring. 15470 bp synthetic construct QL-ELE-00-012 82 bp View
MA851163.1 emblrelpat JP 2019024497-A/3: Cotton coloring. 16845 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.