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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
MA057386.1 emblrelpat JP 2018023386-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
MA092440.1 emblrelpat JP 2018023384-A/201: PLANT REGULATO... 712 bp synthetic construct QL-ELE-00-012 82 bp View
MA092440.1 emblrelpat JP 2018023384-A/201: PLANT REGULATO... 712 bp synthetic construct QL-ELE-00-012 82 bp View
MA092449.1 emblrelpat JP 2018023384-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
MA092449.1 emblrelpat JP 2018023384-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
MA350436.1 emblrelpat JP 2018075003-A/1: PRODUCTION OF LO... 21527 bp synthetic construct QL-ELE-00-012 82 bp View
MA350437.1 emblrelpat JP 2018075003-A/2: PRODUCTION OF LO... 23512 bp synthetic construct QL-ELE-00-012 82 bp View
MA350438.1 emblrelpat JP 2018075003-A/3: PRODUCTION OF LO... 25787 bp synthetic construct QL-ELE-00-012 82 bp View
MA350439.1 emblrelpat JP 2018075003-A/4: PRODUCTION OF LO... 22824 bp synthetic construct QL-ELE-00-012 82 bp View
MA350440.1 emblrelpat JP 2018075003-A/5: PRODUCTION OF LO... 24809 bp synthetic construct QL-ELE-00-012 82 bp View
MA350441.1 emblrelpat JP 2018075003-A/6: PRODUCTION OF LO... 26543 bp synthetic construct QL-ELE-00-012 82 bp View
MA350442.1 emblrelpat JP 2018075003-A/7: PRODUCTION OF LO... 23760 bp synthetic construct QL-ELE-00-012 82 bp View
MA350443.1 emblrelpat JP 2018075003-A/8: PRODUCTION OF LO... 11042 bp synthetic construct QL-ELE-00-012 82 bp View
MA350443.1 emblrelpat JP 2018075003-A/8: PRODUCTION OF LO... 11042 bp synthetic construct QL-ELE-00-012 82 bp View
MA350443.1 emblrelpat JP 2018075003-A/8: PRODUCTION OF LO... 11042 bp synthetic construct QL-ELE-00-012 82 bp View
MA350443.1 emblrelpat JP 2018075003-A/8: PRODUCTION OF LO... 11042 bp synthetic construct QL-ELE-00-012 82 bp View
MA393570.1 emblrelpat JP 2018108079-A/7: Methods and Comp... 10608 bp synthetic construct QL-ELE-00-012 82 bp View
MA394835.1 emblrelpat JP 2018108101-A/161: PLANT REGULATO... 1204 bp synthetic construct QL-ELE-00-012 82 bp View
MA394835.1 emblrelpat JP 2018108101-A/161: PLANT REGULATO... 1204 bp synthetic construct QL-ELE-00-012 82 bp View
MA394837.1 emblrelpat JP 2018108101-A/163: PLANT REGULATO... 1446 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.