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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LX264157.1 emblrelpat JP 2016032477-A/91: Recombinant Inf... 3061 bp synthetic construct QL-ELE-00-012 82 bp View
LX264158.1 emblrelpat JP 2016032477-A/92: Recombinant Inf... 3085 bp synthetic construct QL-ELE-00-012 82 bp View
LX264161.1 emblrelpat JP 2016032477-A/95: Recombinant Inf... 3115 bp synthetic construct QL-ELE-00-012 82 bp View
LX264162.1 emblrelpat JP 2016032477-A/96: Recombinant Inf... 3142 bp synthetic construct QL-ELE-00-012 82 bp View
LX269763.1 emblrelpat JP 2016052331-A/64: Influenza Virus... 2065 bp synthetic construct QL-ELE-00-012 82 bp View
LX269779.1 emblrelpat JP 2016052331-A/80: Influenza Virus... 3079 bp synthetic construct QL-ELE-00-012 82 bp View
LX269782.1 emblrelpat JP 2016052331-A/83: Influenza Virus... 3067 bp synthetic construct QL-ELE-00-012 82 bp View
LX269783.1 emblrelpat JP 2016052331-A/84: Influenza Virus... 3091 bp synthetic construct QL-ELE-00-012 82 bp View
LX269786.1 emblrelpat JP 2016052331-A/87: Influenza Virus... 3058 bp synthetic construct QL-ELE-00-012 82 bp View
LX269787.1 emblrelpat JP 2016052331-A/88: Influenza Virus... 3079 bp synthetic construct QL-ELE-00-012 82 bp View
LX269790.1 emblrelpat JP 2016052331-A/91: Influenza Virus... 3061 bp synthetic construct QL-ELE-00-012 82 bp View
LX269791.1 emblrelpat JP 2016052331-A/92: Influenza Virus... 3085 bp synthetic construct QL-ELE-00-012 82 bp View
LX269794.1 emblrelpat JP 2016052331-A/95: Influenza Virus... 3115 bp synthetic construct QL-ELE-00-012 82 bp View
LX269795.1 emblrelpat JP 2016052331-A/96: Influenza Virus... 3142 bp synthetic construct QL-ELE-00-012 82 bp View
LX269809.1 emblrelpat JP 2016052331-A/110: Influenza Viru... 3462 bp synthetic construct QL-ELE-00-012 82 bp View
LX269809.1 emblrelpat JP 2016052331-A/110: Influenza Viru... 3462 bp synthetic construct QL-ELE-00-012 82 bp View
LX269810.1 emblrelpat JP 2016052331-A/111: Influenza Viru... 747 bp synthetic construct QL-ELE-00-012 82 bp View
LX269810.1 emblrelpat JP 2016052331-A/111: Influenza Viru... 747 bp synthetic construct QL-ELE-00-012 82 bp View
LX269815.1 emblrelpat JP 2016052331-A/116: Influenza Viru... 3505 bp synthetic construct QL-ELE-00-012 82 bp View
LX269815.1 emblrelpat JP 2016052331-A/116: Influenza Viru... 3505 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.