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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LQ106803.1 emblrelpat Sequence 49 from Patent EP2925870. 16791 bp synthetic construct QL-ELE-00-012 82 bp View
LQ217342.1 emblrelpat Sequence 2 from Patent EP2988590. 524 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LQ217347.1 emblrelpat Sequence 7 from Patent EP2988590. 833 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LQ218814.1 emblrelpat Sequence 28 from Patent EP2983476. 15791 bp synthetic construct QL-ELE-00-012 82 bp View
LQ218814.1 emblrelpat Sequence 28 from Patent EP2983476. 15791 bp synthetic construct QL-ELE-00-012 82 bp View
LQ218815.1 emblrelpat Sequence 29 from Patent EP2983476. 16178 bp synthetic construct QL-ELE-00-012 82 bp View
LQ218815.1 emblrelpat Sequence 29 from Patent EP2983476. 16178 bp synthetic construct QL-ELE-00-012 82 bp View
LQ268338.1 emblrelpat Sequence 354 from Patent WO2016071438. 1027 bp synthetic construct QL-ELE-00-012 82 bp View
LQ268342.1 emblrelpat Sequence 358 from Patent WO2016071438. 11159 bp synthetic construct QL-ELE-00-012 82 bp View
LQ298400.1 emblrelpat Sequence 120 from Patent EP2995194. 877 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LQ317245.1 emblrelpat Sequence 1 from Patent EP3007547. 3741 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317245.1 emblrelpat Sequence 1 from Patent EP3007547. 3741 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317245.1 emblrelpat Sequence 1 from Patent EP3007547. 3741 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317248.1 emblrelpat Sequence 4 from Patent EP3007547. 3741 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317248.1 emblrelpat Sequence 4 from Patent EP3007547. 3741 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317248.1 emblrelpat Sequence 4 from Patent EP3007547. 3741 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317249.1 emblrelpat Sequence 5 from Patent EP3007547. 3739 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317249.1 emblrelpat Sequence 5 from Patent EP3007547. 3739 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317249.1 emblrelpat Sequence 5 from Patent EP3007547. 3739 bp synthetic construct QL-ELE-00-012 82 bp View
LQ317253.1 emblrelpat Sequence 9 from Patent EP3007547. 5607 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.