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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LF714159.1 emblrelpat JP 2016163583-A/173: PLANT REGULATO... 1101 bp synthetic construct QL-ELE-00-012 82 bp View
LF714162.1 emblrelpat JP 2016163583-A/176: PLANT REGULATO... 623 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF714162.1 emblrelpat JP 2016163583-A/176: PLANT REGULATO... 623 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF716437.1 emblrelpat WO 2016148074-A/107: Potyvirus-Resi... 1957 bp synthetic construct QL-ELE-00-012 82 bp View
LF775971.1 emblrelpat JP 2016522686-A/16: Process of Prov... 7422 bp synthetic construct QL-ELE-00-012 82 bp View
LF775972.1 emblrelpat JP 2016522686-A/17: Process of Prov... 6662 bp synthetic construct QL-ELE-00-012 82 bp View
LF783684.1 emblrelpat JP 2016174568-A/107: Potyvirus-Resi... 1957 bp synthetic construct QL-ELE-00-012 82 bp View
LF851857.1 emblrelpat JP 2015130896-A/16: Transgenic Plan... 1868 bp synthetic construct QL-ELE-00-012 82 bp View
LF934790.1 emblrelpat JP 2015154789-A/17: MODIFICATION OF... 5908 bp synthetic construct QL-ELE-00-012 82 bp View
LF934790.1 emblrelpat JP 2015154789-A/17: MODIFICATION OF... 5908 bp synthetic construct QL-ELE-00-012 82 bp View
LF938431.1 emblrelpat JP 2016187343-A/11: Herbicide toler... 4076 bp synthetic construct QL-ELE-00-012 82 bp View
LF948263.1 emblrelpat JP 2016214238-A/201: PLANT REGULATO... 712 bp synthetic construct QL-ELE-00-012 82 bp View
LF948263.1 emblrelpat JP 2016214238-A/201: PLANT REGULATO... 712 bp synthetic construct QL-ELE-00-012 82 bp View
LF948272.1 emblrelpat JP 2016214238-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF948272.1 emblrelpat JP 2016214238-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LG018528.1 emblrelpat KR 1020150003819-A/15: PLANT REGULA... 324 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LG025923.1 emblrelpat KR 1020150006469-A/427: METHODS AND... 7390 bp synthetic construct QL-ELE-00-012 82 bp View
LG027303.1 emblrelpat KR 1020150018568-A/21: Method for P... 12295 bp synthetic construct QL-ELE-00-012 82 bp View
LG045221.1 emblrelpat KR 1020150037771-A/1: PRODUCTION OF... 21527 bp synthetic construct QL-ELE-00-012 82 bp View
LG045222.1 emblrelpat KR 1020150037771-A/2: PRODUCTION OF... 23512 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.