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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LF387599.1 emblrelpat JP 2014509866-A/170: PLANT REGULATO... 1446 bp synthetic construct QL-ELE-00-012 82 bp View
LF387600.1 emblrelpat JP 2014509866-A/171: PLANT REGULATO... 1165 bp synthetic construct QL-ELE-00-012 82 bp View
LF387600.1 emblrelpat JP 2014509866-A/171: PLANT REGULATO... 1165 bp synthetic construct QL-ELE-00-012 82 bp View
LF387601.1 emblrelpat JP 2014509866-A/172: PLANT REGULATO... 1751 bp synthetic construct QL-ELE-00-012 82 bp View
LF387601.1 emblrelpat JP 2014509866-A/172: PLANT REGULATO... 1751 bp synthetic construct QL-ELE-00-012 82 bp View
LF387602.1 emblrelpat JP 2014509866-A/173: PLANT REGULATO... 1101 bp synthetic construct QL-ELE-00-012 82 bp View
LF387602.1 emblrelpat JP 2014509866-A/173: PLANT REGULATO... 1101 bp synthetic construct QL-ELE-00-012 82 bp View
LF387605.1 emblrelpat JP 2014509866-A/176: PLANT REGULATO... 623 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF387605.1 emblrelpat JP 2014509866-A/176: PLANT REGULATO... 623 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF388931.1 emblrelpat JP 2014512819-A/4: AN EXPRESSION CO... 538 bp unidentified QL-ELE-00-012 82 bp View
LF388934.1 emblrelpat JP 2014512819-A/7: AN EXPRESSION CO... 7955 bp synthetic construct QL-ELE-00-012 82 bp View
LF388934.1 emblrelpat JP 2014512819-A/7: AN EXPRESSION CO... 7955 bp synthetic construct QL-ELE-00-012 82 bp View
LF388934.1 emblrelpat JP 2014512819-A/7: AN EXPRESSION CO... 7955 bp synthetic construct QL-ELE-00-012 82 bp View
LF389267.1 emblrelpat JP 2014509864-A/9: A YEAST RECOMBIN... 2452 bp synthetic construct QL-ELE-00-012 82 bp View
LF389267.1 emblrelpat JP 2014509864-A/9: A YEAST RECOMBIN... 2452 bp synthetic construct QL-ELE-00-012 82 bp View
LF390195.1 emblrelpat JP 2014513982-A/201: PLANT REGULATO... 712 bp synthetic construct QL-ELE-00-012 82 bp View
LF390195.1 emblrelpat JP 2014513982-A/201: PLANT REGULATO... 712 bp synthetic construct QL-ELE-00-012 82 bp View
LF390204.1 emblrelpat JP 2014513982-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF390204.1 emblrelpat JP 2014513982-A/210: PLANT REGULATO... 622 bp Cauliflower mosaic virus QL-ELE-00-012 82 bp View
LF621810.1 emblrelpat JP 2015517304-A/19: Rotavirus-like ... 4903 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.