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Food, Farming, Fisheries
European Union Reference Laboratory for Genetically Modified Food and Feed (EURL GMFF)

Amplicon finder

1) Select detection method(s) *

Note: if more than one method is selected, only records that produce amplicons with all those methods will be shown
Event-specific
Construct-specific
Element-specific
Taxon-specific

2) Optionally select also negative method(s)

Note: If you select methods here, records that produce amplicons with any of those methods will be removed

3) Select database(s) *
 nt GenBank nt section (NCBI)
 emblreltgn ENA transgenic data class division (EMBL-EBI)
 emblrelpat ENA patent data class division (EMBL-EBI)
 nrnl1 Non-redundant patent nucleotide database level-1 (EMBL-EBI)

4) Select the maximum number of gaps/mismatches
Gaps:
Mismatches:
* required field

Results : 13333 amplicons

Restrict to taxon(s):

Too many unique records to show the Unique Records page (max: 500)


Record ID Database Record description Record length Taxon Method Amplicon size Match details
LC375949.1 nt Binary vector pMpGWB337tdTN DNA, co... 19474 bp Binary vector pMpGWB337tdTN QL-ELE-00-012 82 bp View
LC375950.1 nt Binary vector pMpGWB337Cit DNA, com... 18729 bp Binary vector pMpGWB337Cit QL-ELE-00-012 82 bp View
LC375950.1 nt Binary vector pMpGWB337Cit DNA, com... 18729 bp Binary vector pMpGWB337Cit QL-ELE-00-012 82 bp View
LC375951.1 nt Binary vector pMpGWB337tdT DNA, com... 19485 bp Binary vector pMpGWB337tdT QL-ELE-00-012 82 bp View
LC375951.1 nt Binary vector pMpGWB337tdT DNA, com... 19485 bp Binary vector pMpGWB337tdT QL-ELE-00-012 82 bp View
LC375952.1 nt Binary vector pMpGWB337TR DNA, comp... 18712 bp Binary vector pMpGWB337TR QL-ELE-00-012 82 bp View
LC375952.1 nt Binary vector pMpGWB337TR DNA, comp... 18712 bp Binary vector pMpGWB337TR QL-ELE-00-012 82 bp View
LC375953.1 nt Binary vector pMpGWB337mT DNA, comp... 18735 bp Binary vector pMpGWB337mT QL-ELE-00-012 82 bp View
LC375953.1 nt Binary vector pMpGWB337mT DNA, comp... 18735 bp Binary vector pMpGWB337mT QL-ELE-00-012 82 bp View
LC388570.1 nt Moss transformation vector pPGX6M D... 12671 bp Moss transformation vector pPGX6M QL-ELE-00-012 82 bp View
LC388571.1 nt Moss transformation vector pT2GX6 D... 12481 bp Moss transformation vector pT2GX6 QL-ELE-00-012 82 bp View
LC460477.1 nt Binary vector pMgPoef4_129-2A-GFP D... 16867 bp Binary vector pMgPoef4_129-2A-GFP QL-ELE-00-012 82 bp View
LC460477.1 nt Binary vector pMgPoef4_129-2A-GFP D... 16867 bp Binary vector pMgPoef4_129-2A-GFP QL-ELE-00-012 82 bp View
LC482137.1 nt Cloning vector pINA134 DNA, complet... 18254 bp Cloning vector pINA134 QL-ELE-00-012 82 bp View
LC577760.1 nt Synthetic construct 2020KI-pPZPVX-C... 11775 bp synthetic construct QL-ELE-00-012 82 bp View
LC577761.1 nt Synthetic construct 2020KI-pPZPVX-A... 12950 bp synthetic construct QL-ELE-00-012 82 bp View
LC703380.1 nt Moss transformation vector pCit-aph... 6228 bp Moss transformation vector pCit-aphIV QL-ELE-00-012 82 bp View
LF131485.1 emblrelpat JP 2016508035-A/161: PLANT REGULATO... 1204 bp synthetic construct QL-ELE-00-012 82 bp View
LF131485.1 emblrelpat JP 2016508035-A/161: PLANT REGULATO... 1204 bp synthetic construct QL-ELE-00-012 82 bp View
LF131487.1 emblrelpat JP 2016508035-A/163: PLANT REGULATO... 1446 bp synthetic construct QL-ELE-00-012 82 bp View

Related publications:

Petrillo, M., et al. “JRC GMO-Amplicons: A Collection of Nucleic Acid Sequences Related to Genetically Modified Organisms.” Database (Oxford), vol. 2015 bav101, 30 Sep. 2015, doi:10.1093/database/bav101. 

Angers-Loustau, A., et al. “Using the EURL GMFF Online Bioinformatics Resources: A how-to Guide for Practical JRC GMO-Matrix and JRC GMO-Amplicons Case Uses.” European Commission, Ispra, JRC101853, 2016.